BAC Information

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BAC

Clone NameMSMg01-116I05
Chromosome3 (Build37)
Map Location 49,114,450 - 49,114,964
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B24Rik, LOC100039404, EG666230
Downstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116I05.T7 (MSMg01no116_i05.b1)MSMg01-116I05.TJ (MSMg01no116_i05.g1)
ACCAG327876AG327877
length716723
length of high quality
(start - end)
289 (77 - 365)515 (79 - 593)
definitionCHROMAT_FILE: MSMg01no116_i05.b1 PHD_FILE: MSMg01no116_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:47 2005CHROMAT_FILE: MSMg01no116_i05.g1 PHD_FILE: MSMg01no116_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTACTCTATAATTGCGGCGCTAAACGACTCCTATTTTCCGACCTGCGCGG
AATTCACAAAGCATTTCTAGAAGAAGTTACTGGTTACAAGCTTCTCAATG
GTCACAAATATGCATAGCCTGATGGTTTTCTGATTGGAGAATGTTTAGAA
TGGCTATAATGAATAAATGCACACACACACACACACACACACCCATTATT
ATAAAGCCATGTGTGTCATAATTTCTTCCCTTAATTTTGTTAATTAGTAA
CCACTTTGCTTTATTTCCATAATATCCATACCAAAAATTATTAGTTAAAA
ATTTGTATTTTACTTAATTACATTTAATAATCTTTCTAAAATAAATAATG
TAGAAATATTGTCTGATTGAACACAATGCATTTTCCATTGTCCTTCTTTG
TATACTAGGAAACCACATCAGCTTAATCCAATGGCTCCTTTCTAAACATA
CAAATCATATCTCATACAAGTATCCAACAAAATGATTATGTATCCCAATA
TTTTTAGCAAAAATTTGGAAATATGTCTTCCAATCTAGCGTTCTGATCTT
ATCAAAAGCATTTGTAAGAAACAATTTTGGAAGCATTACTTTCCTTTTAA
CATCATTCCTTTTATGTGTAGCTTGAAATTTGAGAAATTCATTGTTGCTT
CCCCCTTATCTTCTATCTTTTGAAGAACCCTTCCAAATTTTGTGACTGTT
CTATTTTTTTACATTA
NNTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGAAACTGTTCTTTTAATGTGTTTTCAACTTAA
TTTTAGACTTGATTTTGTTGGTTACTGTTTTGCTATGATGTATATCTTTG
TACCATATTGAGGCTGATACCTGAAAATGTCAGATCAGGGAATTTGATCT
CCTGAAACTGACAGTAGAGCCTTAAAGAATCTAGTTATTTTCTTTACTTA
AAATTTCCAGTACTCTAGCAGGGAAGTGATTAGGACCATTACTAATGATA
AGTCTTCTGACAAAAGGTTTGAGCCATCACGAATGATTTCAAGAGAAAAT
CCTGAGGTACTTGCCTTTCCTCTCTGAGAGAGCCTTGGTCTATTAATCCA
TCCTTGAATAAGAAATTGCATTAAAATGTTATCCCCTTTCCTAGTTTCCC
CTCAGAATATTAATCATTCATTAATTAATCATTCATTAATCATCAGTAAC
CAATACCAATATTATTTCAAAATTACTCACTTAGGTCTCTCTGGTCTGTC
AGTGGAATATTGAAAGTTGATTTGATATGAGCGAATAATCTAATACCAAG
AGAGTCATATACTTACTGAGATTATGATGTCTCGATAAAGAAAATTTGAA
AGATATGTTTATTGCCCAACGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_i05.g1 MSMg01no116_i05.g1 CHROMAT_FILE:
MSMg01no116_i05.g1 PHD_FILE: MSMg01no116_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:47 2005
         (515 letters)



>mm_chr3_49114331_49115245
          Length = 915

 Score =  988 bits (511), Expect = 0.0
 Identities = 514/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctgagccccattttttaatggggttatttgaaactgttcttttaatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 tttgtttagctctgagccccattttttaatggggttatttgaaactgttcttttaatgtg 575

                                                                       
Query: 61  ttttcaacttaattttagacttgattttgttggttactgttttgctatgatgtatatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttttcaacttaattttagacttgattttgttggttactgttttgctatgatgtatatctt 515

                                                                       
Query: 121 tgtaccatattgaggctgatacctgaaaatgtcagatcagggaatttgatctcctgaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgtaccatattgaggctgatacctgaaaatgtcagatcagggaatttgatctcctgaaac 455

                                                                       
Query: 181 tgacagtagagccttaaagaatctagttattttctttacttaaaatttccagtactctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgacagtagagccttaaagaatctagttattttctttacttaaaatttccagtactctag 395

                                                                       
Query: 241 cagggaagtgattaggaccattactaatgataagtcttctgacaaaaggtttgagccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cagggaagtgattaggaccattactaatgataagtcttctgacaaaaggtttgagccatc 335

                                                                       
Query: 301 acgaatgatttcaagagaaaatcctgaggtacttgcctttcctctctgagagagccttgg 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aggaatgatttcaagagaaaatcctgaggtacttgcctttcctctctgagagagccttgg 275

                                                                       
Query: 361 tctattaatccatccttgaataagaaattgcattaaaatgttatcccctttcctagtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tctattaatccatccttgaataagaaattgcattaaaatgttatcccctttcctagtttc 215

                                                                       
Query: 421 ccctcagaatattaatcattcattaattaatcattcattaatcatcagtaaccaatacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ccctcagaatattaatcattcattaattaatcattcattaatcatcagtaaccaatacca 155

                                              
Query: 481 atattatttcaaaattactcacttaggtctctctg 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 154 atattatttcaaaattactcacttaggtctctctg 120


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)