BAC Information

Click to search

BAC

Clone NameMSMg01-116M17
Chromosome3 (Build37)
Map Location 140,733,248 - 140,733,677
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC229883, LOC621343, 4930590L14Rik
Downstream genePdha2, Unc5c, LOC100039923, Bmpr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116M17.T7 (MSMg01no116_m17.b1)MSMg01-116M17.TJ (MSMg01no116_m17.g1)
ACCAG328088AG328089
length729722
length of high quality
(start - end)
431 (77 - 507)403 (77 - 479)
definitionCHROMAT_FILE: MSMg01no116_m17.b1 PHD_FILE: MSMg01no116_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:09 2005CHROMAT_FILE: MSMg01no116_m17.g1 PHD_FILE: MSMg01no116_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCGTATTTTTGTCACTCAGGTTTTAATTTTTATCCCTTTATT
TACAATTATCTAACTTTATTCCAAAATGATCTTCTTGGATCTGGATACAA
TATTTGTTTTCTTACAACAATTTGTTTTCTTCTTTCTGATTTGTATTAGT
GATTGAGCCTTCCTGATTAGGATTCCCAGGGACAAGATCTACCCACTGAA
ATACAAGAACTCTCCTTACTAGCAGATTAAAAAATAAAACAAAACAAAGC
AAAAACCACAATGAGTAAGGAAGACAAGAAATGAGAGAGAGAAAGAGGAA
GAAACAAAGCATGACTATCAAAGATTATAATTCTGTATCTAGCAAACCTA
AAGATATAAAGATAAGAAAATCCCCAGATGAAAATTTCAAAAGAATTCTA
GTAAAAATGATAAAATAACATTAAATATGAAAGAAAATGGCAAACAAATC
TATTCCAAGGTCTTGAGAGTAAAGGTCGCAGGATAAAGGGAAAAGTCTAC
AACTTATGTGATAAAATCAGCAGGGGGTTGAAATCAGATACTATTAGGCA
CACAAATCTATATTTTGAAAAATACGAAGCTAATTTTTAAAAAGAGACCA
TTTATTTAACAAAGGTTCCTTGTAAAAGACTGACTATTCTCTAATTACCT
GATAGTAGAAGACTTGACTTAAAAGAAGG
NTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGTGCATATATCCCGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGCAGGGCATCATCCTGAG
TGAGGGAACACATTCACCAAGAACCTCACACCATATGTATTCCCTGATAA
GTGGATATTAGCCCCCAACCTAAGATACCCAAGATATTAAATATAATTTG
CTAAACACATGTAATCTCAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_m17.b1 MSMg01no116_m17.b1 CHROMAT_FILE:
MSMg01no116_m17.b1 PHD_FILE: MSMg01no116_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:09 2005
         (431 letters)



>mm_chr3_140733048_140733877
          Length = 830

 Score =  810 bits (419), Expect = 0.0
 Identities = 428/431 (99%), Gaps = 1/431 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggttttaatttttatccctttatttacaattatctaactttattccaaaatgatcttctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ggttttaatttttatccctttatttacaattatctaactttattccaaaatgat-ttctt 259

                                                                       
Query: 61  ggatctggatacaatatttgttttcttacaacaatttgttttcttctttctgatttgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggatctggatacaatatttgttttcttacaacaatttgttttcttctttctgatttgtat 319

                                                                       
Query: 121 tagtgattgagccttcctgattaggattcccagggacaagatctacccactgaaatacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagtgattgagccttcctgattaggattcccagggacaagatctacccactgaaatacaa 379

                                                                       
Query: 181 gaactctccttactagcagattaaaaaataaaacaaaacaaagcaaaaaccacaatgagt 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 gaactctccttactagcagattaaaaaacaaaacaaaacaaagcaaaaaccacaatgagt 439

                                                                       
Query: 241 aaggaagacaagaaatgagagagagaaagaggaagaaacaaagcatgactatcaaagatt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaggaagacaagaaaagagagagagaaagaggaagaaacaaagcatgactatcaaagatt 499

                                                                       
Query: 301 ataattctgtatctagcaaacctaaagatataaagataagaaaatccccagatgaaaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ataattctgtatctagcaaacctaaagatataaagataagaaaatccccagatgaaaatt 559

                                                                       
Query: 361 tcaaaagaattctagtaaaaatgataaaataacattaaatatgaaagaaaatggcaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcaaaagaattctagtaaaaatgataaaataacattaaatatgaaagaaaatggcaaaca 619

                      
Query: 421 aatctattcca 431
           |||||||||||
Sbjct: 620 aatctattcca 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 830
Length adjustment: 9
Effective length of query: 422
Effective length of database: 821
Effective search space:   346462
Effective search space used:   346462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)