BAC Information

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BAC

Clone NameMSMg01-116O19
Chromosome3 (Build37)
Map Location 50,025,322 - 50,025,506
singlet/doubletsinglet
Overlap genenone
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116O19.T7 (MSMg01no116_o19.b1)MSMg01-116O19.TJ (MSMg01no116_o19.g1)
ACCAG328186AG328187
length721815
length of high quality
(start - end)
629 (78 - 706)185 (74 - 258)
definitionCHROMAT_FILE: MSMg01no116_o19.b1 PHD_FILE: MSMg01no116_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:19 2005CHROMAT_FILE: MSMg01no116_o19.g1 PHD_FILE: MSMg01no116_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAACAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTTGGATTCCCGGTGGGGATTGCATTGAATCTGTAGA
TTGCTTTTGGCAAGATAGCCATTTTTACAATGTTGATCCTGCCAATCCAT
GAGCATGGGAGATCTTTCCATCTTCTGAGATCTTCTTTAATTTCTTTCTT
CAGAGACTAGAAGTTTTTATCATACAGATCTTTCACTTCCTTAGTTAGAG
TCACGCCGAGATATTTTATATTATTTGTGACTATTGAGAAGGGTGTTGTT
TCCCTAATTTCTTTCTCAGCCTGTTTATTCTTTGTGTAGAGAAAGGCCAT
TGACTTGTTTGAGTTAATTTTATATCCAGCTACTTCACCGAAGCTGTTTG
TACTAAGGTCAAATCTAAATGGATCAAAGAACTTCACATAAAACCAGAGA
CACTCAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGC
ACAGGGGGAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATC
AAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA
AAGACACCGTCAATAACACAAAAAGACCACCAACAGATTGGGAAAGGATC
TTTACCTATCCTAAATCAGATAGGGGACTACTATCCAACATATATAAAGA
ACTCAAGAAGGTGGACTTCAA
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAATGTTATAAGAAGGGACAAATGTCA
CTCTGTCTTCTAGCTTTGTGTTCTTGCAAGTAGCAATGCTCAACTGGCAT
TCCACGGCATGAAGAACATTTTATTTTTGGGACAGTAGCTTTAGCAATGT
TGCAGAAAATCTGCAGAACTTCTGAGGAAACCTCTTTTCATGTTGATCTA
TGGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTCTCTCCCT
GAACGCGCCCCCGCCCCCCCCCCTCACCTCCGACTCCACCCACCCCCCCG
CTGCTTTTTTCTTTTTCCCCCCCCCCCCCCCACCCCTTGTCCCTATGCTC
CCATCGCCCCCCACCCGCCCCCCATACAAAAAAATAACCACCATGTTTGT
GTCCCCCCCTCTCTCCCCCGTGATCTCGCCCCCTCCCCTACTCCCCCTCT
CCTCCTTTCTACCCCCCTCTCCCCGAACCCTGACCTCCCCCCCGCGGCCC
CACCCCTCCCTCACCCGTACCTTCTAACAATCCGTCGCACTCACCCCTTC
CCCTTATCCATTTTTCCTCTCCTCCCCCCCCCCCCCCCACGCATATCATC
CTTCCCCCCACCTTCCCTCCACTTTTTCTCCTCCCCCGCCCTACCCCCAC
TCCTCCGCCTCCGCACACCCCCCCCCTCCCTCCCCACCCCCCCCCTACTT
ATCACTCTTTCTCCCCTCCCCGTCATATATCTTCCTTTCCCTTTCCCCCC
CTCCCTACCCGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_o19.g1 MSMg01no116_o19.g1 CHROMAT_FILE:
MSMg01no116_o19.g1 PHD_FILE: MSMg01no116_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:19 2005
         (185 letters)



>mm_chr3_50025122_50025706
          Length = 585

 Score =  358 bits (185), Expect = e-103
 Identities = 185/185 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgttataagaagggacaaatgtcactctgtcttctagctttgtgttcttgcaagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgttataagaagggacaaatgtcactctgtcttctagctttgtgttcttgcaagtag 326

                                                                       
Query: 61  caatgctcaactggcattccacggcatgaagaacattttatttttgggacagtagcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caatgctcaactggcattccacggcatgaagaacattttatttttgggacagtagcttta 266

                                                                       
Query: 121 gcaatgttgcagaaaatctgcagaacttctgaggaaacctcttttcatgttgatctatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaatgttgcagaaaatctgcagaacttctgaggaaacctcttttcatgttgatctatgg 206

                
Query: 181 tgtgt 185
           |||||
Sbjct: 205 tgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)