BAC Information

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BAC

Clone NameMSMg01-117J09
Chromosome3 (Build37)
Map Location 115,982,301 - 115,982,686
singlet/doubletsinglet
Overlap geneCdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117J09.T7 (MSMg01no117_j09.b1)MSMg01-117J09.TJ (MSMg01no117_j09.g1)
ACCAG328680AG328681
length720711
length of high quality
(start - end)
339 (78 - 416)386 (72 - 457)
definitionCHROMAT_FILE: MSMg01no117_j09.b1 PHD_FILE: MSMg01no117_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:11 2005CHROMAT_FILE: MSMg01no117_j09.g1 PHD_FILE: MSMg01no117_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTATTTCCTACAGAATGGCAGAGAAACACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATAGCTAATATCAAAAACTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGATTCC
TCAGAAAATTAGACATAGTATTACCGGATTATCCCGAAATACCTCTCCTG
GGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCAC
TATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGCACATTTACACA
ATGGAATACTACTCAGCTATTTACAAAAATGAATTTATGAAATTCCTAGG
CAAATGGATGGACCTGGAGGGTATCATCCTGAGCGAAGTAACCCAATCAC
AAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATAATAGCCCAGA
AACCTATGATACCCCAGATATTAGATACCTCTTGCCAAAGGCATGACATT
CTTAGAAGAACGCAGACCAA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAAAGCGTTGAGAAGCCTCCTTTGTCG
GAATATGATCAGTGTGCGCATTTTGTGTGTTAATTCTTAGGCAGTGCAGA
AAGCCTCAAGCTGTTATAGAGACATGAAAGGGCTATAAGGGAAAAACAGA
GAGTTGTAGATTAAAAATTTCCCAGTGTTCACTTCTTCTTTAATACTTTG
GATGCAAGGGTATAAATAAAACCTTATATTATCAAATATATAGTTTTCTT
AATTACCTAAAGTGTTAAAATAAACTATTTTTTCTTTGATGCATTTGCCT
CTATAGTTAGAATCCACACTGGGGAATAACAAGCAGACCGTATGTGTCAT
TCTTAGAGACTTGCGGAATTAAGAAATATAATAGAAACCCAGTGTAGCAA
ATGGTCGCATAGCTGTAGAAAGGGCTCTGGCTTCCCAGGGTGCCAACCCG
AAAGTTTTTATACAAATGAATCGGATAGAAGATATCGTTCTGCTGTCGGG
ATGTCAGTCTGACATCCTCTCTTATTTGTTGTTTGTGACACACAGCTCAT
GGCCGTATTTACTATCCATCTGTACCATATGTCAATGTATAATTATGACA
CATGTCCCTGACACTATTAATTATCTGGGCTGTTTAAAAAATAAGCACCC
CGGGACGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_j09.g1 MSMg01no117_j09.g1 CHROMAT_FILE:
MSMg01no117_j09.g1 PHD_FILE: MSMg01no117_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:11 2005
         (386 letters)



>mm_chr3_115982101_115982886
          Length = 786

 Score =  725 bits (375), Expect = 0.0
 Identities = 384/387 (99%), Gaps = 2/387 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaaagcgttgagaagcctcctttgtcggaatatg-atcagtgtgcgcattttgtgtgt 59
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 586 attaaagcgttgagaagcctcctttgtcggaatatgtatcagtgtgcgcattttgtgtgt 527

                                                                       
Query: 60  taattcttaggcagtgcagaaagcctcaagctgttatagagacatgaaagggctataagg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 taattcttaggcagtgcagaaagcctcaagctgttatagagacatgaaagggctataagg 467

                                                                       
Query: 120 gaaaaacagagagttgtagattaaaaatttcccagtgttcacttcttctttaatactttg 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 466 gaaaaacagagagttgtagattaaaaa-ttcccagtgttcacttcttctttaatactttg 408

                                                                       
Query: 180 gatgcaagggtataaataaaaccttatattatcaaatatatagttttcttaattacctaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gatgcaagggtataaataaaaccttatattatcaaatatatagttttcttaattacctaa 348

                                                                       
Query: 240 agtgttaaaataaactattttttctttgatgcatttgcctctatagttagaatccacact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agtgttaaaataaactattttttctttgatgcatttgcctctatagttagaatccacact 288

                                                                       
Query: 300 ggggaataacaagcagaccgtatgtgtcattcttagagacttgcggaattaagaaatata 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 287 ggggaataacaagcagaccgtatgtgtcattcttagagacttggggaattaagaaatata 228

                                      
Query: 360 atagaaacccagtgtagcaaatggtcg 386
           |||||||||||||||||||||||||||
Sbjct: 227 atagaaacccagtgtagcaaatggtcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)