NATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGAGCCG
CGGAATTCCTTGATTTCCTTAGATTTGACCTTAGAACAAGGAGAAAGGAA
TGGATCAATTCACATTCTTCTACATGATAGCCAAAAGTTGTGCCAGTACC
ACTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTG
TCAAAAAACTAGTAACCATAGGTTGGGGTCTTCATTTCTATTCCATTGGT
CTACTTGTCTGTCACTATCCAGTACTATGCAGTTTTTATCTCAGTTGCTC
TGTAGTACAGCTTTAGGTTGGGCATGGTGATTCCCCCAGAGGTCCTTTTA
TCATTGAGAAGAGTTTTTGCTATCATAGCTTTTTTTTTTTTTTTTTTTTT
TTGGTATTCCAGGTGAATTTGCAAATTGTCCTTTCTAATTCTTTGAGGAA
TTGAGTTGTAATTTTGATGGGGATTGCATTGAATCTGGAGATTGCTTTTG
GCAAGATAGCCATTTGTACTATATTGATCCTGCCAATCCATGAGCATGGG
AGATCTTTCCATCTTCTGAGACTTTCTTTGATTTCTTTCTTCAGAGACTT
GAAGTTCTTGGCCTACAGATCTTTCACTTCATTAAGTAGAGTCATGCCAA
GGCATTTTATATTATTTGTTACCATTGAAAAGGTTGTTGCTTCCCCAATT
TCTTTCTCAGCCCGTTT

NACGATGAAGTGGTAGCCTGGCGCCGCCTGTTCAAAGAXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATTTACCAAATATATTCGTGTATTTATT
TTGGTTTTTAATCATCTTCCCACTCTTTTCTTGAAATGATTTATTAATTC
TTTAAAATTGTCATACGCTGTGTTTTGATTGCATTGGCCCTTTCTTTTCC
ATGTTCCTTCACTGTCTACCAGCACTGTCCTATACACCTTTCTTCATAAC
TTTTTTTCTTTTTTAAGACTGGTTAGGTCCAGTTTGTATTAAGTATTCTG
GGGCATGGGGCCATCCCCTAGAGTTTTGTAAGCTTAGCAGAGGTCACATC
CTTAAATTAACCCGGCTTTCCATCTTTCAACAACTATCTGTTTCCTATAA
TTCTCCAGCAGGGGATACAATTTCATGCCCACAGTCCTCCTCCATGTTGG
AAATGTTTTCTTTCTTGAGGTTGTATAAGTCTTGTGTCTGTTCTTCTCTC
CTGATTTTTAATGTTATAAATATAGCTTTCTCTTTCTTTCAAAATCTAGA
GTATTCCTTAATTCTTTCACTTGAACATAGTTTTTGGAGCATAACATATG
CTACATGCAAAAGAAATTAAGTCTGAGCTGGGGATTGAAACTTCTGTCCT
GAATTCTTGATGACTATTTCAATTCCAACTCAATTCAAATTTCATTCCAA
CTCAT

Query= MSMg01no117_k10.g1 MSMg01no117_k10.g1 CHROMAT_FILE:
MSMg01no117_k10.g1 PHD_FILE: MSMg01no117_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:16 2005
         (592 letters)



>mm_chr3_47066608_47067598
          Length = 991

 Score = 1091 bits (564), Expect = 0.0
 Identities = 584/592 (98%), Gaps = 4/592 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttaccaaatatattcgtgtatttattttggtttttaatcatcttcccactcttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttaccaaatatattcgtgtatttattttggtttttaatcatcttcccactcttttct 260

                                                                       
Query: 61  tgaaatgatttattaattctttaaaattgtcatacgctgtgttttgattgcattggccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaatgatttattaattctttaaaattgtcatacgctgtgttttgattgcattggccct 320

                                                                       
Query: 121 ttcttttccatgttccttcactgtctaccagcactgtcctatacacctttcttcataact 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttttccatgttcctccactgtctaccagcactgtcctatacacctttcttcataact 380

                                                                       
Query: 181 ttttttcttttttaagactggttaggtccagtttgtattaagtattctggggcatggggc 240
           ||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttt-cttttttaagaccgattaggtccagtttgtattaagtattctggggcatggggc 439

                                                                       
Query: 241 catcccctagagttttgtaagcttagcagaggtcacatccttaaattaacccggctttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catcccctagagttttgtaagcttagcagaggtcacatccttaaattaacccggctttcc 499

                                                                       
Query: 301 atctttcaacaactatctgtttcctataattctccagcaggggatacaatttcatgccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atctttcaacaactatctgtttcctataattctccagcaggggatacaatttcatgccca 559

                                                                       
Query: 361 cagtcctcctccatgttggaaatgttttctttcttgaggttgtataagtcttgtgtctgt 420
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cagtcctcc---atgttggaaatgttttctttcttgaggttgtataagtcttgtgtctgt 616

                                                                       
Query: 421 tcttctctcctgatttttaatgttataaatatagctttctctttctttcaaaatctagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tcttctctcctgatttttaatgttataaatatagctttctctttctttcaaaatctagag 676

                                                                       
Query: 481 tattccttaattctttcacttgaacatagtttttggagcataacatatgctacatgcaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tattccttaattctttcacttgaacatagtttttggagcataacatatgctacatgcaaa 736

                                                               
Query: 541 agaaattaagtctgagctggggattgaaacttctgtcctgaattcttgatga 592
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 737 agaaattaagtctgacctggggattgaaacttctgtcctgaattcttgatga 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 991
Length adjustment: 10
Effective length of query: 582
Effective length of database: 981
Effective search space:   570942
Effective search space used:   570942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)