BAC Information

Click to search

BAC

Clone NameMSMg01-119B05
Chromosome3 (Build37)
Map Location 100,929,807 - 100,930,244
singlet/doubletsinglet
Overlap genenone
Upstream geneSpag17, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn
Downstream geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119B05.T7 (MSMg01no119_b05.b1)MSMg01-119B05.TJ (MSMg01no119_b05.g1)
ACCAG329787AG329788
length922705
length of high quality
(start - end)
---414 (77 - 490)
definitionCHROMAT_FILE: MSMg01no119_b05.b1 PHD_FILE: MSMg01no119_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:07 2005CHROMAT_FILE: MSMg01no119_b05.g1 PHD_FILE: MSMg01no119_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGCCGC
GGAATTCATTCATATTCCGGAATGGAACTGTAAAATTTCAGAACACAGAG
ACTAAAGCAATCAGGTGAGTGGACATACGGGAGGGATGAGGGTAAAGGGG
GGCGGAGATTACCCCACGCTTTATCTCCCCCTCTATCCTTTACCATTTCT
GCTCTTCTTACTTATCTTCTGTCTAGACTATTCTTTACCCTATTTAATCC
TGACTAACACTGCAATTATTGACCCTTTTATATCTTCTACTCTTTTCATC
GTACTAGTATACGATTCGTCACTTCGCAGTTTCATCCCCCACGTCTTCTA
ACCACGTTCTTTATTATTGACATGATCCTCTTCTTACCACTTTATCCATC
CCTAACCTAGTACACTACTTCCCTGCCCCTTCATCTCACTTCATATTTTA
TGCTATATTCTCATTACACTCTTCTACCGTTAAACGACTTCCTCCTTCTT
ATTTCTCACTTCCCATTCTTCCCCGCTCATTTCTCCTTCTATCTCTTTTC
TCCTACGCATTTAGCCCTCTTCTTCTCATTTATCATTCAACTATCTTACC
CTCTCACACCTCTTCTTCGCCGTCACGCTTTCATGCACCGCCCGTATTCT
TTGAACACGTATTTTAACCCTTTGTTCCTCCTTAAACTTGGCTTCTTCAC
TCAATATCTCTTCTTTCACCTCTTATCCCTCCTGTTTTCACATCTTTGTT
AACTACTTCGTTTTTCTCGGCTCACATATATCGCCATCCCTTCTCATTTC
TTCGCCTCTTTTTCCGCCGTATATCTCCCCCGCCTTTCCCCTCTACTTCC
TCACCCACCGCGCTATTCTTCTCTTTTCTATTCTCCCCACCATCCACTTT
TCTCCCCTCTTCGCCTCATCCT
CTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCATGGGTCACTTTAAGTCTGC
TGTACAACAGGATCCTCTGAGAACACTCACCGTCTTCGTCAAGTCAATTG
GGCTGCTTTCAAGAGTCCTTCAAGAGCCATCCTGTGGGTTGCTGATATTC
CCTCATAGAATATCTTGTTTGACTTCAACTGAACCCTTCCCAATACTCCA
GCCTTTCATCTCAGGCATGTGTAATGCAATTCTTCCTAATTCCAGGTGAC
TTCAGAGTCTCAGGAGGTGATAAGAGTACACAGGCTAGGGAAGTGTGTAT
GAGTACATGTGTGTGTGTCTGTGTGTGTGTATGTGTGTATACGTGCACAC
ACATGCATGCACACACAGGGAAAGCCATCACTCACACTGGGTGATGACTT
CCCTTGTATTATTTAGGGGTCACCCATGCTCCTACTCCAACAGGCAACCC
CTCACCCACGCCCTGTAAGTAAACCCAATAAACCCATTGATTTTCCAGAG
TGAACATTAGCGGAGAGTTATATTGGTTTGTCATTGGGAATGTATGAGGA
GGGGTAAACAGTGCTTACATCTCCCTAGGGAAGGAATTCTCAAGACTAAG
GCTGTTTCTAGCACTAACTCCTCTAGTATGGGTCGCATCTCCCTGCTATT
GGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_b05.g1 MSMg01no119_b05.g1 CHROMAT_FILE:
MSMg01no119_b05.g1 PHD_FILE: MSMg01no119_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:07 2005
         (414 letters)



>mm_chr3_100929632_100930445
          Length = 814

 Score =  708 bits (366), Expect = 0.0
 Identities = 409/438 (93%), Gaps = 25/438 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccatgggtcactttaagtctgctgtacaacaggatcctctgagaacactcaccgtctt 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 176 tcccatgggtcactttaagtctgctgtagaacaggatcctctgagaacactcaccgtctt 235

                                                                       
Query: 61  cgtcaagtcaattgggctgctttcaagagtccttcaagagccatcctgtgggttgctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cgtcaagtcaattgggctgctttcaagagtccttcaagagccatcctgtgggttgctgat 295

                                                                       
Query: 121 attccctcatagaatatcttgtttgacttcaactgaacccttcccaatactccagccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 296 attccctcatagaatatcttgtttgacttcaactgaacccttcccaagactccagccttt 355

                                                                       
Query: 181 catctcaggcatgtgtaatgcaattct-tcctaattccaggtgacttcagagtctcagga 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 356 catctcaggcatgtgtaatgcaattctgtcctaattccaggtgacttcagagtctcagga 415

                                                                       
Query: 240 ggtgataagagtacacaggctagggaagtgtgtatgagtacatgtgtgtgtgtctgtgtg 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 416 ggtgataagagtacacaggctagggaagtgtgtatgagtacgtgtgtgtgtgtgtgtgtg 475

                                                                       
Query: 300 tgtgt---------------------a---tgtgtgtatacgtgcacacacatgcatgca 335
           |||||                     |   ||||||||||||||||||||||||||||||
Sbjct: 476 tgtgtgtgtgtgtgtgtgtgtctgtgagtctgtgtgtatacgtgcacacacatgcatgca 535

                                                                       
Query: 336 cacacagggaaagccatcactcacactgggtgatgacttcccttgtattatttaggggtc 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cacacagggaaagccatcactcacactgggtgatgacttcccttgtattatttaggggtc 595

                             
Query: 396 acccatgctcctactcca 413
           ||||||||||||||||||
Sbjct: 596 acccatgctcctactcca 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)