Query= MSMg01no119_j16.b1 MSMg01no119_j16.b1 CHROMAT_FILE:
MSMg01no119_j16.b1 PHD_FILE: MSMg01no119_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:48 2005
(655 letters)
>mm_chr3_13932629_13933684
Length = 1056
Score = 634 bits (328), Expect = 0.0
Identities = 350/360 (97%), Gaps = 7/360 (1%)
Strand = Plus / Minus
Query: 5 gaattccagatat---ccaaaatctaatactttcaatattatatattagtaataacagta 61
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaattccagatataaa--aaaatctaatactttcaatattatatattagtaataacagta 299
Query: 62 tattttctttatcatgcttatcaaagaacaatctttctctttgcatcattgaataaaatg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tattttctttatcatgcttatcaaagaacaatctttctctttgcatcattgaataaaatg 239
Query: 122 ttagtagtaaccttgtcttaaaatctttttagaattctctcatacattattagatcccca 181
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 238 ttagtagtaaccttgtcttaaaatctttttagaattctctcat--attattagatcccca 181
Query: 182 ttgcagtttcccatccctccaatcctcccagtttcccaacgccaaccttatgtcacccct 241
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 180 ttgcagtttcccatccctccaatcctcccagtttcccaaccccaaccttatgtcacccct 121
Query: 242 gttttccttcagaaaaagcaggcttcaaggtatatcaactgaacataaaatacactacag 301
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 120 gttttccttcagaaaaagcaggcttcaagggatatcaactgaacataaaatacactacag 61
Query: 302 taagactagtcacataccctcatgtcaaaccttggcaaggcaacctagtaggaggaaaaa 361
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 taagactaggcacataccctcatgtcaaaccttggcaaggcaacctagtaggaggaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1056
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1046
Effective search space: 674670
Effective search space used: 674670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_j16.g1 MSMg01no119_j16.g1 CHROMAT_FILE:
MSMg01no119_j16.g1 PHD_FILE: MSMg01no119_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:48 2005
(482 letters)
>mm_chr3_13805254_13806135
Length = 882
Score = 279 bits (144), Expect = 4e-79
Identities = 168/176 (95%)
Strand = Plus / Plus
Query: 307 ttacacttcttttatcaaaggtattcaccatttgcaggatgaagccaagtcacagcaagg 366
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 507 ttacacttcttttatcaaaggtattcaccatttgcaggatgaagccaagtcatagcaagg 566
Query: 367 ttgtatctcagttccctcaccatgatatttggggataaagcttctattcaggccatttac 426
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttgtatttaagttccctcaccgtgatatttggggataaagcttctattcaggccatttac 626
Query: 427 ttccctgttgttgtcaggcaccttcagcagttttgtcatagaactgagtaactcag 482
||||||||| | ||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 627 ttccctgttatagtcaggctccttcagcagttttgtcaaagaactgagtaactcag 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
