Query= MSMg01no119_l04.b1 MSMg01no119_l04.b1 CHROMAT_FILE:
MSMg01no119_l04.b1 PHD_FILE: MSMg01no119_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:55 2005
(633 letters)
>mm_chr3_11340191_11341222
Length = 1032
Score = 1181 bits (611), Expect = 0.0
Identities = 626/633 (98%), Gaps = 5/633 (0%)
Strand = Plus / Minus
Query: 1 tgagcaggtcatctgattgttgtagattaagccctgggctgatacagatttctatcagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgagcaggtcatctgattgttgtagattaagccctgggctgatacagatttctatcagag 727
Query: 61 cactgctggaagcttaaagcttaaggaaattttagctgcacccttgtgtgatataaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cactgctggaagcttaaagcttaaggaaattttagctgcacccttgtgtgatataaatga 667
Query: 121 ctatcttaatatttaaatttccttctgttgagatataaaagatatgtgtctatgtgtata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctatcttaatatttaaatttccttctgttgagatataaaagatatgtgtctatgtgtata 607
Query: 181 gcatgaagagataatagatacattttgtagttttaatactttcaagtatactgtcttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcatgaagagataatagatacattttgtagttttaatactttcaagtatactgtcttggt 547
Query: 241 atactatatttttgtcaaattttgtttttatgtaataggactgtatctgcccttggaata 300
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 atacta-acttttgtcaaattttgtttttatgtaataggactgtatctgcccttggaata 488
Query: 301 aaagacctatgaaaaatattattaatcactcactgtgagaatgatttctgacttttgaag 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaagccctatgaaaaatattattaatcactcactgtgagaatgatttctgacttttgaag 428
Query: 361 aaatgtgactttgtatatcagaagtttctcaagggttcaagttctcatcatttctaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaatgtgactttgtatatcagaagtttctcaagggttcaagttctcatcatttctaatta 368
Query: 421 ttaacttaggtgtttggagtgttgggattaagttttccattacatttcaatctttcattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ttaacttaggtgtttggagtgttgggattaagttttccattacatttcaatctttcattt 308
Query: 481 gacctataagtatagacaaaaatgaaaacaccaagaaagcagttacattttcaagcaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gacctataagtatagacaaaaatgaaaacaccaagaaagcagttacattttcaagcaaac 248
Query: 541 tctttctcagtgagaaatagggcaaactgagttgcttgaaacactcttgtgtgtgtgtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tctttctcagtgagaaatagggcaaactgagttgcttgaaacactcttgtgtgtgtgtgt 188
Query: 601 gtatgtgtgtgtgtgtgtgtgtgtttattagat 633
|||||||||||||||||||| |||||||||
Sbjct: 187 gtatgtgtgtgtgtgtgtgt----ttattagat 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1032
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1022
Effective search space: 636706
Effective search space used: 636706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_l04.g1 MSMg01no119_l04.g1 CHROMAT_FILE:
MSMg01no119_l04.g1 PHD_FILE: MSMg01no119_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:55 2005
(581 letters)
>mm_chr3_11215855_11216835
Length = 981
Score = 1123 bits (581), Expect = 0.0
Identities = 581/581 (100%)
Strand = Plus / Plus
Query: 1 tttgaatctgagactaggctggcctatacagtcagcctttattttgctacacagtattgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaatctgagactaggctggcctatacagtcagcctttattttgctacacagtattgt 260
Query: 61 ctgtcctactaatcacatgtatataaatattaaaatgaaaagaaactatgaaaaattgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtcctactaatcacatgtatataaatattaaaatgaaaagaaactatgaaaaattgag 320
Query: 121 ccaccaaaaggtgaatatttaaattctaagtattacaaatagaatgtagatcagttaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaccaaaaggtgaatatttaaattctaagtattacaaatagaatgtagatcagttaaga 380
Query: 181 aatctaatgaatgaattgaatatatgctagtatgttatactggtttttaaattgacttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatctaatgaatgaattgaatatatgctagtatgttatactggtttttaaattgacttaa 440
Query: 241 tgatgatattgttgcaaactgtaacatcttcaaggaagcataacttgcagacagataaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatgatattgttgcaaactgtaacatcttcaaggaagcataacttgcagacagataaaa 500
Query: 301 ctgttactcttactacatctgcattttacactttctatttctgtttcggatattatattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttactcttactacatctgcattttacactttctatttctgtttcggatattatattg 560
Query: 361 atatgttataaataaaagactaaaaatgactacccagaaactaattgcttattttctatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatgttataaataaaagactaaaaatgactacccagaaactaattgcttattttctatc 620
Query: 421 aaagtattgctcagcttagccgtatctgattatcccattcagttaattaaaatttaatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtattgctcagcttagccgtatctgattatcccattcagttaattaaaatttaatgt 680
Query: 481 ctactcacagtcatcagttatcagacagtcatttgaactgcaatgaacatgagttgtgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctactcacagtcatcagttatcagacagtcatttgaactgcaatgaacatgagttgtgag 740
Query: 541 tgtgttcattatggagaacacacctgctcaatgacatgcag 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgttcattatggagaacacacctgctcaatgacatgcag 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
