Query= MSMg01no120_c15.b1 MSMg01no120_c15.b1 CHROMAT_FILE:
MSMg01no120_c15.b1 PHD_FILE: MSMg01no120_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:31 2005
(618 letters)
>mm_chr3_39950918_39951936
Length = 1019
Score = 1127 bits (583), Expect = 0.0
Identities = 610/619 (98%), Gaps = 1/619 (0%)
Strand = Plus / Minus
Query: 1 cattgtgaattccaaaaataggtagag-agaacaaccagggctccttgagtcaggggtgg 59
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 819 cattgtgaattccaaaaataggtagagtggaacaaccagggctccttgagtcaggggtgg 760
Query: 60 atggtcttggccctcagctgcacatctttaagcaccccagggtgttttctgcatgattgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atggtcttggccctcagctgcacatctttaagcaccccagggtgttttctgcatgattgt 700
Query: 120 gcattcctgttccagacacatgggagtttccaaacacaaaacgaggttagaattccttgc 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 699 gcattcctgttccagacacatgggagtttccaaacacaaaacgaggttagaagtccttgc 640
Query: 180 gataagctgtaaacagagagaagagtcagttctaagttacactttcaagggcaaaggaca 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aataatctgtaaacagagagaagagtcagttctaagttacactttcaagggcaaaggaca 580
Query: 240 attcattccagaagccaggcttagtccccagatttccagtcctgaaactatggttggctt 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 attcactccagaagccaggcttagtccccagatttccagtcctgaaactatggttggctt 520
Query: 300 caaaatgtttttttctgaagccttgcatggacttaaaagtcagggggatttgcctaggta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caaaatgtttttttctgaagccttgcatggacttaaaagtcagggggatttgcctaggta 460
Query: 360 gggagaagctagattgttttttgttttctgctatccataattaggtgaagaacaagatgt 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 459 gggagaagctagattgttttttgttttctgctatccataattaggtgaaaaacaagatgt 400
Query: 420 tcttaaaaagaatccccagaattctaaaggcagcacaaaatacaatgtgtttggaccttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcttaaaaagaatccccagaattctaaaggcagcacaaaatacaatgtgtttggaccttc 340
Query: 480 atgctaaggattgaaatatttcacgtttatttcttcctttatctttataaaccaagaagg 539
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 339 atgctaaggattgaaatatttcacatttatttcttcctttatctttataaatcaagaagg 280
Query: 540 actgtgtaactaagatggtcatttaatgagtaaggaaagcagtagaaagcaatccccaac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 actgtgtaactaagatggtcatttaatgagtaaggaaagcagtagaaagcaatccccaac 220
Query: 600 tctgctgttacagacagcc 618
|||||||||||||||||||
Sbjct: 219 tctgctgttacagacagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_c15.g1 MSMg01no120_c15.g1 CHROMAT_FILE:
MSMg01no120_c15.g1 PHD_FILE: MSMg01no120_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:31 2005
(603 letters)
>mm_chr3_39829922_39830924
Length = 1003
Score = 1141 bits (590), Expect = 0.0
Identities = 599/602 (99%)
Strand = Plus / Plus
Query: 1 acatcagttcatcatgtttgatgatgagactcaccacggctgtatattctgtaatataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatcagttcatcatgtttgatgatgagactcaccacggctgtatattctgtaatataca 260
Query: 61 aatctcaaaataaaattttaacatcatcaagataacttttttgtttgtttctctggaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctcaaaataaaattttaacatcatcaagataacttttttgtttgtttctctggaatc 320
Query: 121 tagttctctgggagtatccctctattaaatctgatcaatattactcagaaaggtgtatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttctctgggagtatccctctattaaatctgatcaatattactcagaaaggtgtatag 380
Query: 181 acaccaatcaccttttctaaaaatgcaaatacaaaacttttctcccaaatcagcatattc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 acaccaatcaccttttctaaaaatgcaaatacaaaacttttctcccaaatcagcatatcc 440
Query: 241 ttgagccaatacccagaaaaatctttatattgacatttctcccagaggaataatataacg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ttgagccaatacccagaaaaatctttatattgacatttctcccagaggaataatataatg 500
Query: 301 acaaaactcaaaatcatacccattttgaaagctgaaataatccaaaacaaatgaagtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaactcaaaatcatacccattttgaaagctgaaataatccaaaacaaatgaagtaaa 560
Query: 361 ctaaaatagtgtatgtgcctattcttaggccttttctattttgccatgcgggataataac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctaaaatagtgtatgtgcctattcttaggccttttctattttgccatgcgggataataac 620
Query: 421 ccagaatttccatggatcccacattagacagaatttgagtatcctataaggcatatttga 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagaatttccatggagcccacattagacagaatttgagtatcctataaggcatatttga 680
Query: 481 aaaggcctaagaataggcgtcagatttctagatggtgacattctctagagattccctttg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggcctaagaataggcgtcagatttctagatggtgacattctctagagattccctttg 740
Query: 541 tcacagttcaacaccactatcttgacttcagtcttctcatcccctcttctaaaagccctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcacagttcaacaccactatcttgacttcagtcttctcatcccctcttctaaaagccctc 800
Query: 601 ag 602
||
Sbjct: 801 ag 802
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
