CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGCTGGCTCAGTTGTGTACAAATTTTAGTACCTTGAATGACTATCT
CAGTTCCTTTACCTTAGTTTTTAAATGAAAATATAAACACTTACCTTATA
CCATTGTTTTCAAGATAAGAGATTGGCATTTAATGGACAAGTATTTGGTA
AGAATCCCTGTTTCTGTATTTCTGCCATTTTTTTACTTTCTTACTTTATT
GAACATTTTCTTTATTTATATTTCAAATGTTATCCCATTTCCCAGTTTCC
TCACCCACAAAACCCCTATCCCCTCCTGCTACCACTGCTTCTGTGAGGGT
GCTTTCACTTCCACCCACCCACTCCCATTTCACATCCCTGGCATTTCCCT
ACACTGAAGAATTAAGCCTCACAGGACCAAGAGCCTCTCCTTCCATTGAT
GTCTAACCAAAACATTCTCTGCTACACGTGTGGCTGGAACCATAGGCCCC
TTCATGTGTATTCCTTGATTGATGTTTTTGTCCCTGGGAGCTCTGGGGGT
TTTGGTTGATTGATATTGTGATATTTCTATGGGGTTGCAAACCCCTTCAA
CTCCTTCAGGCCTTCCTACCTCCTCCACTTGGGAACCTGTGCTCAATCCA
ATGGTTGGCAGAGAGCATCCCCCTCTGTATTTGTCAGGCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTTAATAGAGTAATTTGAA
TTTCTGCTCCACCTGGGGATTCATCCCATATACAATCACCAAACCCAGAT
ACTATTGCATATGTCATAAAGAATTTGCTGACAGGACCCTGGTACAGCTC
TCTCTTGTGAAGCTATGCCAGTGCCTTGCAAATACAGAAGTGGATGCTCA
CATTCATCTATTGGATGGAACAAAGGGTCCCTAATGAAGGAGCTAAAGTA
CCCAATGAGCTAAAGGGGTATGCAACCTTATAAAAAGAACAACAATATGA
ATTAACCAGTACCCCTCAGAGCTGTGTCTCTAGTTGCATATGTAGCAGAG
GATGGCTTAGTCGACCACCAATGGTAGGAGAGGCCCTTGGTCTTGCGAAG
ATCATATGCCCCAGGACAGAGGAATGCCAGAGCCAGAAAGCAGGAGTGGG
TGGGTTGGGGAGCAGGGCGGGAGGAGGGTATCAGGGACTTTGGGGATAGC
ATTTGAAATGTAAATGAAGAAAATATCTAGTAAAAAATGAAAAAATTAAG
ACAAATATGTGACATATTGTGATATTAATTCCCATAAGGTTTTATAATGA
AATTGAAAAAATATAGCTTCTTAGAGTTT

Query= MSMg01no120_e14.b1 MSMg01no120_e14.b1 CHROMAT_FILE:
MSMg01no120_e14.b1 PHD_FILE: MSMg01no120_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:40 2005
         (564 letters)



>mm_chr3_111354019_111354982
          Length = 964

 Score = 1011 bits (523), Expect = 0.0
 Identities = 553/563 (98%), Gaps = 5/563 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgctggctcagttgtgtacaaattttagtaccttgaatgactatctcagttc 64
           |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 205 gaattcaatgctgggtcagttgtgtacaaattttagtgcctcgaatgactatctcagttc 264

                                                                       
Query: 65  ctttaccttagtttttaaatgaaaatataaacacttaccttataccattgttttcaagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttaccttagtttttaaatgaaaatataaacacttaccttataccattgttttcaagat 324

                                                                       
Query: 125 aagagattggcatttaatggacaagtatttggtaagaatccctgtttctgtatttctgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagagattggcatttaatggacaagtatttggtaagaatccctgtttctgtatttctgcc 384

                                                                       
Query: 185 a-tttttttactttcttactttattgaacattttctttatttatatttcaaatgttatcc 243
           | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 attttttttactttcttactttattgaatattttctttatttatatttcaaatgttatcc 444

                                                                       
Query: 244 catttcccagtttcctcacccacaaaacccctatcccctcc-tgctaccactgcttctgt 302
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 445 catttcccagtttcctcacccacaaaacccctatccc-tccctgctaccactgcttctgt 503

                                                                       
Query: 303 gagggtgctttcacttccacccacccactcccatttcac-atccctggcatttccctaca 361
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 504 gagggtgctttcacttccacccacccactcccatttcacca-ccctggcatttccctaca 562

                                                                       
Query: 362 ctgaagaattaagcctcacaggaccaagagcctctccttccattgatgtctaaccaaaac 421
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgaagaatcaagcctcacaggaccaagagcctctccttccattgatgtctaaccaaaac 622

                                                                       
Query: 422 attctctgctacacgtgtggctggaaccataggccccttcatgtgtattccttgattgat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attctctgctacacgtgtggctggaaccataggccccttcatgtgtattccttgattgat 682

                                                                       
Query: 482 gtttttgtccctgggagctctgggggttttggttgattgatattgtgatatttctatggg 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtttttgtccctgggagctctgggggttttggttgattgatattgtgatatttctatggg 742

                                  
Query: 542 gttgcaaaccccttcaactcctt 564
           |||||||||||||||||||||||
Sbjct: 743 gttgcaaaccccttcaactcctt 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)