BAC Information

Click to search

BAC

Clone NameMSMg01-120L23
Chromosome3 (Build37)
Map Location 32,181,981 - 32,286,173
singlet/doubletdoublet
Overlap geneZmat3, 4930429B21Rik
Upstream geneSlc7a14, LOC625125, Kcnmb2, LOC665514
Downstream genePik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L23.T7 (MSMg01no120_l23.b1)MSMg01-120L23.TJ (MSMg01no120_l23.g1)
ACCAG331038AG331039
length707707
length of high quality
(start - end)
510 (76 - 585)395 (77 - 471)
definitionCHROMAT_FILE: MSMg01no120_l23.b1 PHD_FILE: MSMg01no120_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:17 2005CHROMAT_FILE: MSMg01no120_l23.g1 PHD_FILE: MSMg01no120_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,285,768 - 32,286,173)(32,181,981 - 32,182,371)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTACATAAGAACCTCATTTTTAATGGGGCTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CTCTATATGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTCTC
AGCCTGCTTTCTTAAAGAGCCCAAGACCACCAGTCCAGGGATGGTACATA
CAATGGGCTGGGCCCTTCCCCTTCAATCACTAATTATGAAAACACACTTG
TCATCCAAGCCAGAAAAACTGGGTTTTTCCCCCCAGAACCCATGTAAAAA
GCCAGATGTGGTGATATAAATATATAATCTTGATTCCCCCTAATGGATGG
GGCCCCTAAGTGGTTATTGAATACCAAGTAGCCACCCTTGTAATTATATA
ATATAATTAACGTTAAACAGACTCATCATGTTGTATCTGTACATTTATGT
GATTATTTACTTTAAACTTTTAGGCTATTTAGATTTTATTTATGTGAGTG
AGTGTTTTTGGCTGTCTGCATGTAGATATACCATATGTGGGTCTGGTGCT
CAAGGAAGTAAGGAGAGGTAGTAGACCCCCTGGAACTGAAGGTACAGATG
TTTCCGCTCTACCATATGGGCGCTGGGAATCAAACCTGTGTCTTCTGCAA
TAACAAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTGGCTGCACTCTGTAGACCT
GTAAGAGTCTGCACAAAGCTCTCACTGGGTTCGTTCTGAGGGTAGCATTT
CCAAATACTTCCTTCAGGGTGTGTGAGAGTCAAACTTCAGAAATAATTAA
GCATCTGAAGAAAGGATCGTCTCATTCAAGACTGAGAAGAATTGTAGGTG
TGTGGTGGAGAAACACCAACATACAGCCAGCCTTCTTTCAGCCTTTACTC
TGAAGCAAACCAAACAAAATTAAATATTTAAGGAATTCTCAGCCTGAGTC
CAACCAATGCAAGCAGAAAAATATGCCAAGATGGCTTTTAAACATAATCC
TTAACCCTAGGTCACTCACCCAGGGACACTGCTAATGGCATATGACAAGT
GACAAAAGCAGAGACTGCAGTGACTCCAAGCTCCTTAAAGCTGAAGTGGT
GTCAAATATATTTCAGCCTGTATTAAATGACGTATCTGCATGAACGTGGA
GGAAAGCAGCAAGTGAGTGAATAGAAAGCAATGGGTGAGATTCACCCTAC
AAATTGTCACTCCAAGAAGCTAAATAGTTTCACATGTTGCACTTTTCTAA
GTAAAGGGGGAAAAAAAAAAACAAAGCAAGCTAAACGTATATGCACACGC
TGCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l23.b1 MSMg01no120_l23.b1 CHROMAT_FILE:
MSMg01no120_l23.b1 PHD_FILE: MSMg01no120_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:17 2005
         (510 letters)



>mm_chr3_32285264_32286173
          Length = 910

 Score =  754 bits (390), Expect = 0.0
 Identities = 402/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 105 ctttcccaatctgttggtctcagcctgctttcttaaagagcccaagaccaccagtccagg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 ctttcccaatctgttggtctcagcctgctttcttaaagagcccaagaccaccagtccagg 851

                                                                       
Query: 165 gatggtacatacaatgggctgggcccttccccttcaatcactaattatgaaaacacactt 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gatggtacatacaatgggctgggcccttccccttcaatcactaattatgaaaacacactt 791

                                                                       
Query: 225 gtcatccaagccagaaaaactgggtttttccccccagaacccatgtaaaaagccagatgt 284
           ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
Sbjct: 790 gtcatccaagccagaaaaactgggttcaaccccccagaacccatgtaaaaagccagatgt 731

                                                                       
Query: 285 ggtgatataaatatataatcttgattccccctaatggatggggcccctaagtggttattg 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ggtgatataaatatataatcttgattccccctaatggatggggcccctaagtggttattg 671

                                                                       
Query: 345 aataccaagtagccacccttgtaattatataatataattaacgttaaacagactcatcat 404
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 670 aataccaagtagccacccttgtaattatataatacaattaacgttaaacagactcatcat 611

                                                                       
Query: 405 gttgtatctgtacatttatgtgattatttactttaaacttttaggctatttagattttat 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gttgtatctgtacatttatgtgattatttactttaaacttttaggctatttagattttat 551

                                                         
Query: 465 ttatgtgagtgagtgtttttggctgtctgcatgtagatataccata 510
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttatgtgagtgagtgtttttggctgtctgcatgtagatataccata 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no120_l23.g1 MSMg01no120_l23.g1 CHROMAT_FILE:
MSMg01no120_l23.g1 PHD_FILE: MSMg01no120_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:17 2005
         (395 letters)



>mm_chr3_32181781_32182575
          Length = 795

 Score =  717 bits (371), Expect = 0.0
 Identities = 386/391 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttggctgcactctgtagacctgtaagagtctgcacaaagctctcactgggttcgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttggctgcactctgtagacctgtaagagtctgcacaaagctctcactgggttcgttc 260

                                                                       
Query: 61  tgagggtagcatttccaaatacttccttcagggtgtgtgagagtcaaacttcagaaataa 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagggtagcatttccaaacacttccttcagggtgtgtgagagtcaaacttcagaaataa 320

                                                                       
Query: 121 ttaagcatctgaagaaaggatcgtctcattcaagactgagaagaattgtaggtgtgtggt 180
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 321 ttaagcatctgaagaaaggatcgtcccattcaagactaagaagaattgtaggtgtgtggt 380

                                                                       
Query: 181 ggagaaacaccaacatacagccagccttctttcagcctttactctgaagcaaaccaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagaaacaccaacatacagccagccttctttcagcctttactctgaagcaaaccaaaca 440

                                                                       
Query: 241 aaattaaatatttaaggaattctcagcctgagtccaaccaatgcaagcagaaaaatatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattaaatatttaaggaattctcagcctgagtccaaccaatgcaagcagaaaaatatgc 500

                                                                       
Query: 301 caagatggcttttaaacataatccttaaccctaggtcactcacccagggacactgctaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagatggcttttaaacataatccttaaccctaggtcactcacccagggacactgctaat 560

                                          
Query: 361 ggcatatgacaagtgacaaaagcagagactg 391
           | ||| |||||||||||||||||||||||||
Sbjct: 561 gccatgtgacaagtgacaaaagcagagactg 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)