BAC Information

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BAC

Clone NameMSMg01-121E16
Chromosome3 (Build37)
Map Location 7,079,238 - 7,079,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121E16.T7 (MSMg01no121_e16.b1)MSMg01-121E16.TJ (MSMg01no121_e16.g1)
ACCAG331441AG331442
length781716
length of high quality
(start - end)
275 (106 - 380)490 (67 - 556)
definitionCHROMAT_FILE: MSMg01no121_e16.b1 PHD_FILE: MSMg01no121_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:01 2005CHROMAT_FILE: MSMg01no121_e16.g1 PHD_FILE: MSMg01no121_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAACACAACGGAAAANAGAAAATAAGGATAAAAAAAGNGAGGAAAAAAA
NGGGGGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATTTGCTATCTAAAAAATGTATTTTTCTGAGAATC
AAGGGCTAAGTTCATAAAATGGTGATTTATACCCTAATCAAAAGGGAACC
TGGGATGGTGATTGAATTGATATGTAAATAAAAGACTGGTCAGTGGTTTG
CAAGAGCTGCCTTATCTACACAGCTGTCTGGAGAGCCAGCTCAAGCATAA
CACAGGAGATGTCAGCTTGTACCTTCAGTTGACTTAGAGTGGTTTCTTCT
GCCACTGCTTCTAAACACTTCTTCCTCAGTACTGTTTTCTCCAAGCTGAG
GCTGACCCTTGTTAAGCTAATATTTTTTTTCCCCCCCCCCGCCCTTATAT
CACTTGAGGAAACAATTCTCCGCCCAAAATCCCTAGACTACCTAAGAATA
AATCACTATACCCGTCCGGGATAAACTACTTTTTCATCGTTAATCAAAGA
AGTGCAGCTTGCTACTAAAACAATACAGGCTATGGGGGCTACATGCCCGA
ATTTGAAAGGAGGGCTTTATTGTTGTAAACACCTGGCCTTCATATATAAT
ATTTTAAAAGATTCTCTATTGATAATGACCTGAAAGCGTCTTCCCTTAAG
ATACCCTCTCACACGTAGATTTTTTGCGCAGCTTCTCTGGTTTTAATCGC
CCTTGATTCCTAAGGCGATTGAGGAACCAGT
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCTTTTTCCTTTGGTGAGGGGAGAGGTTTGATG
ACCTAATGGGCCCCTTCCATCTCCTGTATCTTTGATGAGGCCACAGGCCT
CCGAGTTGAGAACTGTAAAGAGTTACTGTAGAGAATTTTCCTTTGTAGTG
ATTTTCCCTTTTTGGTAATATTTGACATTTTTGCAATTGTGCTTTGATTC
AGTTTTGTCTACCACACAGCTCAGTGTGATAGTGAAGACAGACTCTACTA
AGACACAGGCACACTCACACATGTATACATGAAATATAACAGACCCAAAC
CTGCTGATAGCTGGCTATATACTAATGAAGTCCATAGATATCAAAAGGGC
TTCAACAAAAAAATATATACACATGTATTTTCCATATAATAGCTTATATG
GAATGACTAAGGTAGCATTTTCTCTTTTACTTATCTTTTTTTAATAATAT
AATATTATTATAATATATAACTAATATATTATTCATATATAAGTGTGTTT
ACATTCAAAATAAAAATTAAATTATTTTTATAAAAATGGATCAAGATTAA
AGCCAATTTATTTCTATATATCTCATTATCAGAAACAATTGTCATTGATT
ACTTTACATGATATCTAGACCCTAGTAAGAGATCTATTTTCTTCCACCTT
ACTTGCCCCTGGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_e16.g1 MSMg01no121_e16.g1 CHROMAT_FILE:
MSMg01no121_e16.g1 PHD_FILE: MSMg01no121_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:01 2005
         (490 letters)



>mm_chr3_7079038_7079927
          Length = 890

 Score =  878 bits (454), Expect = 0.0
 Identities = 481/490 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctttttcctttggtgaggggagaggtttgatgacctaatgggccccttccatctcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 atctttttcctttggtgaggggagaggtttgatgacctaatgggccttttccatctcctg 260

                                                                       
Query: 61  tatctttgatgaggccacaggcctccgagttgagaactgtaaagagttactgtagagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatctttgatgaggccacaggcctccgagttgagaactgtaaagagttactgtagagaat 320

                                                                       
Query: 121 tttcctttgtagtgattttccctttttggtaatatttgacatttttgcaattgtgctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctttgtagtgattttccctttttggtaatatttgacatttttgcaattgtgctttg 380

                                                                       
Query: 181 attcagttttgtctaccacacagctcagtgtgatagtgaagacagactctactaagacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcagttttgtctaccacacagctcagtgtgatagtgaagacagactctactaagacac 440

                                                                       
Query: 241 aggcacactcacacatgtatacatgaaatataacagacccaaacctgctgatagctggct 300
           |||||||| |||||||||||||||||||||||||| ||||||| |||||||||| ||| |
Sbjct: 441 aggcacacacacacatgtatacatgaaatataacacacccaaaactgctgatagttggtt 500

                                                                       
Query: 301 atatactaatgaagtccatagatatcaaaagggcttcaacaaaaaaatatatacacatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatactaatgaagtccatagatatcaaaagggcttcaacaaaaaaatatatacacatgt 560

                                                                       
Query: 361 attttccatataatagcttatatggaatgactaaggtagcattttctcttttacttatct 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttccatataatagcttacatggaatgactaaggtagcattttctcttttacttatct 620

                                                                       
Query: 421 ttttttaataatataatattattataatatataactaatatattattcatatataagtgt 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 ttttttaataatataatattattataatatataactaatatattattcatatataaatgt 680

                     
Query: 481 gtttacattc 490
           ||||||||||
Sbjct: 681 gtttacattc 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)