Query= MSMg01no122_c21.b1 MSMg01no122_c21.b1 CHROMAT_FILE:
MSMg01no122_c21.b1 PHD_FILE: MSMg01no122_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:21 2005
(810 letters)
>mm_chr3_78064524_78065735
Length = 1212
Score = 1423 bits (736), Expect = 0.0
Identities = 791/814 (97%), Gaps = 12/814 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcctatactggggcctataaccttcacagcaccaagggcctctcctcccact- 62
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 204 ggaattctcctatactggggcctagaaccttcacagcaccaagggcctctcctcccattg 263
Query: 63 ---gccgtttgactagaacatcctctgctacatatgcagctagagacagcagtcccacaa 119
|| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 atggc----tgactagaccatcctctgctacatatgcagctagagacagcagtcccacca 319
Query: 120 tgtgatttctttgattggtggtttaggagctagagaaagtacccaaggagctgaaggggt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgtgatttctttgattggtggtttaggagctagagaaagtacccaaggagctgaaggggt 379
Query: 180 ttacagccctttaggaggaccaacaatatgaactaaccagtacccccagcactccctggg 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 380 ttacagccctttaggaggaccaacagtatgaactaaccagtacccccagcactccctggg 439
Query: 240 actaaaccaccaaccaaagaaatcccttgaattctaagtgacctccacagagctataatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 actaaaccaccaaccaaagaaatcccttgaattctaagtgacctccacagagctataatt 499
Query: 300 ggatccttggctttgatgcggaaaagaatttcgggttgagcttatataacacatagtggg 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggatccttggctttgatgaggaaaagaatttcgggttgagcttatataacacatagtggg 559
Query: 360 agtttgattaatggatctttatatagctcttaagcagaagattaggagaagagaagatac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 560 agtttgattaatggatctttatatagctcttaagcagaagattaggagaagagaatatac 619
Query: 420 ttgagaagaaatgcccagaagcaaagctataggtttctcaaagacttaaacttctgtttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttgagaagaaatgcccagaagcaaagctataggtttctcaaagacttaaacttctgtttc 679
Query: 480 ttcacaataaccatacacactgattcagtgggagacttagtactactagtttcaaagggc 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcacaataaccatacacactgattcagtgggagacttagtactactagtttcaaagggt 739
Query: 540 tgctagagttcctaaatgaaatca--gtgtggcagctgaagtatgcataacaggactaaa 597
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 740 tgctagagttcctaaatgaaatcacagtgtggcggctgaagtatgcataacaggactaaa 799
Query: 598 atggctagagtaatgtgggaccgtgaaagacagcctgttttctggttgacctaggtttaa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atggctagagtaatgtgggaccgtgaaagacagcctgttttctggttgacctaggtttaa 859
Query: 658 accctggagacccagcagataactctacaagggatggaaggcccatttgccatgctccca 717
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 860 accctggagacccagcagataactctgcaagggatggaaggcccatttgccatgctccca 919
Query: 718 gacataggctcctggcgcgaggctccagctcaataattctgtggccatcagtcaagtagg 777
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gacataggctcctggcacgaggctccagctcaataattctgtggccatcagtcaagtagg 979
Query: 778 gtaacacttcca-gctcctggtattctgtctgga 810
|||||||| ||| |||||||||||||||||||||
Sbjct: 980 gtaacact-ccaagctcctggtattctgtctgga 1012
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 810
Length of database: 1212
Length adjustment: 10
Effective length of query: 800
Effective length of database: 1202
Effective search space: 961600
Effective search space used: 961600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_c21.g1 MSMg01no122_c21.g1 CHROMAT_FILE:
MSMg01no122_c21.g1 PHD_FILE: MSMg01no122_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:22 2005
(651 letters)
>mm_chr3_78161159_78162211
Length = 1053
Score = 922 bits (477), Expect = 0.0
Identities = 507/517 (98%), Gaps = 4/517 (0%)
Strand = Plus / Minus
Query: 1 tattatgatactaagtgctcacctttacctttctttttagaggaaaagttatttcagtct 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 715 tattatgatactaagtgctcacctttacctttc-ttttagaggaaaagttatttcagtct 657
Query: 61 aatttactagcaattatttcactattttagctttagccttaaatttaataagc-aaaaaa 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 656 aatttagtagcaattatttcactattttagctttagccttaaatttaataagcgaaaaaa 597
Query: 120 aatcaattttcccaaatattttattttactcacctgcagagagctatttctactatctac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aatcaattttcccaaatattttattttactcacctgcagagagctatttctactatctac 537
Query: 180 tataatattagccattcaataagtaattattagatgtattaaagattcatgaattattga 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tctaatattagccattcaataagtaattattagatgtattaaagattcatgaattattga 477
Query: 240 gaatgcaatataacctcatttgtttcatatgattgcccaggatctactgtattaaaatat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaatgcaatataacctcatttgtttcatatgattgcccaggatctactgtattaaaatat 417
Query: 300 cacaaaacctcaaaataattacatttaaaatttcatgtatcctattctttgaaaatgtat 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 416 cacaaaacctcaaaataattacatttaaaatttcatgtaccctattctttgaaaatgtat 357
Query: 360 ttcagaagctgtcattgtaacttaaacttttagagtgtgtggggttcagctcacaatgtg 419
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct: 356 ttcagaagctgtcattgtaatttaaacttttaaattgtgtggggttcagctcacaatgtg 297
Query: 420 taattgaataaaaatgttcttatgta-aaaataataaatgaaaaaaa-ttaaagattatg 477
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 296 taattgaataaaaatgttcttatgtataaaataataaatgaaaaaaaattaaagattatg 237
Query: 478 cccttcctacatggacaaagataaaataagagagtca 514
|||||||||||||||||||||||||||||||||||||
Sbjct: 236 cccttcctacatggacaaagataaaataagagagtca 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1053
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1043
Effective search space: 668563
Effective search space used: 668563
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
