BAC Information

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BAC

Clone NameMSMg01-122I10
Chromosome3 (Build37)
Map Location 155,152,368 - 155,304,811
singlet/doubletdoublet
Overlap geneScp2-ps1
Upstream geneLOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik, Negr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122I10.T7 (MSMg01no122_i10.b1)MSMg01-122I10.TJ (MSMg01no122_i10.g1)
ACCAG332364AG332365
length1,1131,120
length of high quality
(start - end)		741 (80 - 820)768 (120 - 887)
definitionCHROMAT_FILE: MSMg01no122_i10.b1 PHD_FILE: MSMg01no122_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:04 2005CHROMAT_FILE: MSMg01no122_i10.g1 PHD_FILE: MSMg01no122_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,304,214 - 155,304,811)(155,152,368 - 155,153,133)
sequence
TTTTTATTNNAAGCATTGGGCGCTATAGACTCACTATGGGAGAGGATCCG
CGGAATTCCAGAGTAATTAGCATCCTTACAGCAAGGTTTCCACAGGTCCC
TTGCACTTAGAGCCCCACCTGTTTTCCCAGTTCTACTTACCCCCTTTTAT
GGGTTATCAGATAGAGATAAATTAATTGTGAGATTATCAATAAAAACAAT
GTCTGGAATGCACAGTGGGTCACATGACAGAGCTTAGATTGATATTATTT
TTTGTCTCCAAAGTTATGCAGCTTATGGGCCATTGTTTCCAAAATGACTG
TCAGACTAAAAATGTGTGATGGCTCCTGTTCATCTTTAATGTTGTACACA
GGAATCAGCATCCTGCATGATTCATGTGTTGTGCATCCTTGGTGCTGTTA
TTTATTTTTCCAATTAGGTTAGAATGAGAACTTAAAGCCGTACAAGCATT
AAGACAGTGTTTTAAAAATAATGTAATTGTAAAGGTAACTTTAATTCAAT
TGTTATCTCAGAGACTTACTATTGAATGAACTTACATTTCTAGCATTTTC
TGAACTCTGGGTGGCTGGTTCAACTCAGCTGTTGCGTCTCAAACCCTCTC
TAAGCTGACTGATTCACTCTGGCTTCTTTGTCACTGAATTGCTCTGCCAG
GCCTCAATGTACCTAACTCTGGCCATGTGTTCTTCCGGCTCCTCATTCTG
TGGCTTCAGTGACCTCTGGTGACCTGCACTGAGCTGCATGAACACATGAA
TGACCTCAGCAGCGCTGCACTGCACTCACGGTACTGACCCCCATCTGGCA
ACACTGATCTCAGCTCCACTCAGCTGAACTGACTGCCTCCTGGGAGCTGC
TCTTTAATAGCTTTTCTCCTAAGAGTTGGGTGTATCCTATCTCTGACTAT
CTGTCAAATGTTTCTCTGATTCATCCCTTTGTATGCCACTCAACTAGATA
TTGGTTTGGGACTAAAGGGCATTTATCAAAGGATTCCTATCCCAGAGGAA
TTAAAGGGGTCCATGCAATTATCTTGCATTCTAGATCCAAATCTCACCGT
GACTCTAAAAAGGTTCTCTTGGTAGGGGGTTCACAAAAAAAACCATGGTT
GTCTGGTGATTTA

CTTCTATNTNNATTCATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTAAATCCAAGTCCCCTGGAAGAAA
AGTGTGTGCTCTTCCTCATGAAGCCATCTTTCTAGTCATTGGCCCAGTCA
GTTTTACATGACAAATTTTTCAGTTTTATCAGGAAAGATTTTTCTGCCTT
AATTTTCAGCCAGTCACACAGAATGTCCCAACGCCTTTTAACTCTGAAAC
TGAGTTACTATGTGCAGTCTATGCTGAACAACTTTGTGTTCCTTCTGCCT
TTACTCAAAACTTCCAGCCTATATATGCATGTGTGCTCTGCGTTTCTGTC
TCTGTTTCTCAGACTATTCAAGTGTTTCCTGAGTGGAGCCCATCTTCTTG
TGTATCTTGCTTTGTTCATCATCGTCAGGGTGCTGCAAGAGGCAAACACA
TTGTTCCAAAGGAAGTAATGTGGAAATATTGATCCTAAAGAGACTCAGCT
TTGTCTTCCCCGGATGCAGCATAAAGTTTTTCACAGCTCTAGATTGACAA
AATAGCAAATAGAAAGAACAACTAACTTACCTATACCATAGGAATGAAAT
TAGCAAAGCTAAATTGTAAAAAAAATGAAGAAAATATGGAATTTTCATTT
ATATCTAACTTAGTATAAAAACAGAATTATATAAGTTCAAACTATCTATA
CATTTTAACATTAAATTCTACTTATAATTTATTTATATTTTTGTACTTTG
TTTAAAGCTATCCATGTACACTTAATTATGCCAAAGCTTATTTGTTTAGA
TGTATATGTTCTTGCTGGATATATTTATTTCTCCAAGAAGGTAAGCATGC
ACTTACACATCTCTCTCTCTCTCTCTCTCTCTCTCCTAACATTTAAAGAT
TTACAGAGAGGAAAGAATAGGAACACAAAGAAAATATTTTACTACAAATA
CCTACCAAAAAGGATGGGACATGGCCTAGAAAAAGTTTAATTTGTAGGAG
CACCACCCGCTATTTATTTGATGTTCCATGGACCCTTTTTCTCCAACTTG
GAAAAAGGCAACTATAAAGTTTTTTCCTTAATAAATCCTAAAGAAACGAA
CCAAACTCCCCATTTTTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_i10.b1 MSMg01no122_i10.b1 CHROMAT_FILE:
MSMg01no122_i10.b1 PHD_FILE: MSMg01no122_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:04 2005
         (741 letters)



>mm_chr3_155304214_155305354
          Length = 1141

 Score = 1094 bits (566), Expect = 0.0
 Identities = 590/598 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaaggtttccacaggtcccttgcacttagagccccacctgttttcccagttctactta 60
           |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||
Sbjct: 598 agcaaggtttccacaggtcccttgcacttagagggccacctgatttcccagttctactta 539

                                                                       
Query: 61  cccccttttatgggttatcagatagagataaattaattgtgagattatcaataaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cccccttttatgggttatcagatagagataaattaattgtgagattatcaataaaaacaa 479

                                                                       
Query: 121 tgtctggaatgcacagtgggtcacatgacagagcttagattgatattattttttgtctcc 180
           ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct: 478 tgtctggaatgcacagtgggtcagatgacagagcttacaatgatattattttttgtctcc 419

                                                                       
Query: 181 aaagttatgcagcttatgggccattgtttccaaaatgactgtcagactaaaaatgtgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaagttatgcagcttatgggccattgtttccaaaatgactgtcagactaaaaatgtgtga 359

                                                                       
Query: 241 tggctcctgttcatctttaatgttgtacacaggaatcagcatcctgcatgattcatgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tggctcctgttcatctttaatgttgtacacaggaatcagcatcctgcatgattcatgtgt 299

                                                                       
Query: 301 tgtgcatccttggtgctgttatttatttttccaattaggttagaatgagaacttaaagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgtgcatccttggtgctgttatttatttttccaattaggttagaatgagaacttaaagcc 239

                                                                       
Query: 361 gtacaagcattaagacagtgttttaaaaataatgtaattgtaaaggtaactttaattcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtacaagcattaagacagtgttttaaaaataatgtaattgtaaaggtaactttaattcaa 179

                                                                       
Query: 421 ttgttatctcagagacttactattgaatgaacttacatttctagcattttctgaactctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ttgttatctcagagacttactattgaatgaacttacatttctagcattttctgaactctg 119

                                                                       
Query: 481 ggtggctggttcaactcagctgttgcgtctcaaaccctctctaagctgactgattcactc 540
           |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 118 ggtggctggttcaactcagctgttgcgtctcaaaccttctccaagctgactgattcactc 59

                                                                     
Query: 541 tggcttctttgtcactgaattgctctgccaggcctcaatgtacctaactctggccatg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  tggcttctttgtcactgaattgctctgccaggcctcaatgtacctaactctggccatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1141
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1131
Effective search space:   826761
Effective search space used:   826761
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no122_i10.g1 MSMg01no122_i10.g1 CHROMAT_FILE:
MSMg01no122_i10.g1 PHD_FILE: MSMg01no122_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:04 2005
         (768 letters)



>mm_chr3_155152168_155153335
          Length = 1168

 Score = 1442 bits (746), Expect = 0.0
 Identities = 761/766 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagccatctttctagtcattggcccagtcagttttacatgacaaatttttcagttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagccatctttctagtcattggcccagtcagttttacatgacaaatttttcagttttat 260

                                                                       
Query: 61  caggaaagatttttctgccttaattttcagccagtcacacagaatgtcccaacgcctttt 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 caggaaagatttttctgccttaattttcaggcagtcacacagaatgtcccaacgcctttt 320

                                                                       
Query: 121 aactctgaaactgagttactatgtgcagtctatgctgaacaactttgtgttccttctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactctgaaactgagttactatgtgcagtctatgctgaacaactttgtgttccttctgcc 380

                                                                       
Query: 181 tttactcaaaacttccagcctatatatgcatgtgtgctctgcgtttctgtctctgtttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttactcaaaacttccagcctatatatgcatgtgtgctctgcgtttctgtctctgtttct 440

                                                                       
Query: 241 cagactattcaagtgtttcctgagtggagcccatcttcttgtgtatcttgctttgttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagactattcaagtgtttcctgagtggagcccatcttcttgtgtatcttgctttgttcat 500

                                                                       
Query: 301 catcgtcagggtgctgcaagaggcaaacacattgttccaaaggaagtaatgtggaaatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcgtcagggtgctgcaagaggcaaacacattgttccaaaggaagtaatgtggaaatat 560

                                                                       
Query: 361 tgatcctaaagagactcagctttgtcttccccggatgcagcataaagtttttcacagctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgatcctaaagagactcagctttgtcttccccggatgcagcataaagtttttcacagctc 620

                                                                       
Query: 421 tagattgacaaaatagcaaatagaaagaacaactaacttacctataccataggaatgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagattgacaaaatagcaaatagaaagaacaactaacttacctataccataggaatgaaa 680

                                                                       
Query: 481 ttagcaaagctaaattgtaaaaaaaatgaagaaaatatggaattttcatttatatctaac 540
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagcaaagctaaactgtaaaaaaaatgaagaaaatatggaattttcatttatatctaac 740

                                                                       
Query: 541 ttagtataaaaacagaattatataagttcaaactatctatacattttaacattaaattct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagtataaaaacagaattatataagttcaaactatctatacattttaacattaaattct 800

                                                                       
Query: 601 acttataatttatttatatttttgtactttgtttaaagctatccatgtacacttaattat 660
           ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 801 acttataatttatttatatttttctactttgtttaaagctatccatatacacttaattat 860

                                                                       
Query: 661 gccaaagcttatttgtttagatgtatatgttcttgctggatatatttatttctccaagaa 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gccaaagcttatttgtttagatgtatatgttcttgctggatatatttatttctccaagaa 920

                                                         
Query: 721 ggtaagcatgcacttacacatctctctctctctctctctctctctc 766
           |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 921 ggtaagcatgcacttacacacctctctctctctctctctctctctc 966


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1168
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1158
Effective search space:   877764
Effective search space used:   877764
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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