BAC Information

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BAC

Clone NameMSMg01-122O09
Chromosome3 (Build37)
Map Location 74,881,814 - 74,882,347
singlet/doubletsinglet
Overlap geneBC050789
Upstream geneLOC619764, LOC667434, LOC100041551, EG667459
Downstream geneSerpini2, Wdr49, Pdcd10, Serpini1, Golph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122O09.T7 (MSMg01no122_o09.b1)MSMg01-122O09.TJ (MSMg01no122_o09.g1)
ACCAG332640AG332641
length9931,057
length of high quality
(start - end)
675 (83 - 757)555 (129 - 683)
definitionCHROMAT_FILE: MSMg01no122_o09.b1 PHD_FILE: MSMg01no122_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:53 2005CHROMAT_FILE: MSMg01no122_o09.g1 PHD_FILE: MSMg01no122_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCTTTTTTTAACAGTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCTTAATGTCAACCCCTTATAAAATCAAGATCTAGAAGCAGA
TCACAGATTTCCCCTGTGCAATTGCCCAATGGTACAATGGCACTGAACAT
ACATTACCAAGGAAAAGTAAGAAAGAAAGCATACTGAAGAAATACTGGGC
CAAAACAGGATGGGAAACCAATTGGGCAAATTCTAAACTTTGCTTCTTCA
GATAGGATATCCAAGCATGCTTCAGAGCTCCAACTCTTTTCAACTTACTG
GACTGCAACTTATTTCTCTCTCTTGGACTCTTTCCAGTTTCTGCAAGCAG
CTCCCTAGGCAAGTATTCCAGTACTCTGGCATCTCCAACATTCTCAGGTT
TCCAAGGTATCCCAGGCTCTACCTTAATGGGTTCTTTAGGCCTCTATTCA
AAGATATCCCTGCCACACACCTGGCCTTGCCTTGGTCTTCTGAGTTCTGT
GATTAAAGATAACTATCACCATGCCTGCATCTAAGTTCCTTCATTCCTTT
TCACAGGTTGGAAGCTTAGCTGGGTAGGGTCTTGCCTTGAGGTTACCACT
CTCTTGATTCCATTTAGCTTCAGGATTTGCTTTCTTCATTTTTTCTGGTG
TTCCTGTTCTCCACAAACTATATTTTCTCTTGCTCAGTTTACTTCTTTCA
TTATAACTCTGTATAAGAGTTTACTTCTTTCATTATAACTCTGTATAAGA
CTGGCCACTAATAGCCACATAACACAGTCCAATATTAAGTTGTTTTAAAA
GTGTCCTCTGCCCAAATCCTGTTTAATAACCTCCTTCCAACTTTAGCCTT
TTAAGGTTAAAAATTGCTTTTTGGAACCAAAGAAGCCCTTAAATGGTTAA
GCCCCACCAATTTCCTCTTCCAAACCAAAAAAATTTTCCCCCCCCCAAAA
AAAACAAGTTTCCTTTCCTTGGGAAAAAATGGGCCCTATCTAN
CCTCCCTTNNTATAAACTATGGAGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAACTCCCGACACCAACACAT
CATTGAAATGCAGCCCCTTAAATGAGAGGCCAAACTTGGGAAATTCAAAA
ACTGCAAAGGAACCACTGGTAAATACCTATTATATTTACTGCATTAATAG
TTTATAAGGATATTCTTGAGAAAATGATGTTACAGCATAATACATACTAA
AAGGTTATTTTCTACTTAGATTAAAGTACTGCCGCTTAAGGTGATAGCTA
AAGAATGACTCATATTGAAACAGGCATTTCTTATAAGATAAATGTCATTT
TAACATGCATTTTTCTGTGACAAATGATACTAGAGAAACACCTCATTGTT
ATATCAAGAATAATGGTGCTTTTGCAAATAAATTTACAATTGCAGAATAG
AGTGTCATTCTGATATATATATATATATTATATATAAAATGTTTGTGTGT
GTGGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTTATGTACAAAC
ACATATGCATGCATAAACACACATATATGTACATCAATACATTTATTATT
GAAAGTGATATCTTTTTAGGTGCAGAGAAAATGACCACTTCTTGCAATGT
ATGTAAAGCAAGTCATGATTTTAGGAATATGCCTAAGGAGGAAATAGTGC
AACAAACAAAGAAGCTCATTCTTGTACTCATGCCCAATTTTAAAACGTTT
TTGAACCATCATCCTACATAATAGACGTCCTTATGCAACTTTGAATTATT
AATAAATAAAATTCTTGCGTAATTTGAATAAAACCCACCCATTTTTCCCG
CTACCTTGAAATTTTAATTTTTTAAAGGTCATTTTTTATGTCACCCCTAA
CCCTGAATTCCCAGAAAACCCATAACCATGGTTGGGCAACAAATGACAAA
TGGCTCTTGCTTTGAATCCCCTTTTTCAATTTTCTGCCCTCAAAACCCTG
CTTTGCTATTGANTTCTCTTTTGCCTATTTGTCCTTCGCGCTTCATTATG
CAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_o09.g1 MSMg01no122_o09.g1 CHROMAT_FILE:
MSMg01no122_o09.g1 PHD_FILE: MSMg01no122_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:53 2005
         (555 letters)



>mm_chr3_74881814_74882768
          Length = 955

 Score =  959 bits (496), Expect = 0.0
 Identities = 528/546 (96%), Gaps = 12/546 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   caaacttgggaaattcaaaaactgcaaaggaaccactggtaaatacctattatatttact 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caaacttgggaaattcaaaaactgcaaaggaaccactggtaaatacctattatatttact 475

                                                                       
Query: 63  gcattaatagtttataaggatattcttgagaaaatgatgttacagcataatacatactaa 122
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 474 gcattaatagtttataaggatattcttgagaaaatgatgttatagcataatacatactaa 415

                                                                       
Query: 123 aaggttattttctacttagattaaagtactgccgcttaaggtgatagctaaagaatgact 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaggttattttctacttagattaaagtactgccgcttaaggtgatagctaaagaatgact 355

                                                                       
Query: 183 catattgaaacaggcatttcttataagataaatgtcattttaacatgcatttttctgtga 242
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 catatcgaaacaggcatttcttataagataaatgtcattttaacatgcatttttctgtga 295

                                                                       
Query: 243 caaatgatactagagaaacacctcattgttatatcaagaataatggtgcttttgcaaata 302
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 294 caaatgatactagagaaacacctcattgatatatcaagaataatggtgcttttgcaaata 235

                                                                       
Query: 303 aatttacaattgcagaatagagtgtcattctgatatatatatatatattatatataaaat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aatttacaattgcagaatagagtgtcattctgatatatatatatatattatatataaaat 175

                                                                       
Query: 363 gtttgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgttatgtacaaac 422
           ||||||||||||||||||||||||||            |||| |||||||||||||||||
Sbjct: 174 gtttgtgtgtgtggtgtgtgtgtgtg------------cgtgcgtgtgttatgtacaaac 127

                                                                       
Query: 423 acatatgcatgcataaacacacatatatgtacatcaatacatttattattgaaagtgata 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 acatatgcatgcataaacacacatatatgtacatcaatacatttattattgaaagtgata 67

                                                                       
Query: 483 tctttttaggtgcagagaaaatgaccacttcttgcaatgtatgtaaagcaagtcatgatt 542
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 66  tatttttaggtgcagagaaaatgaccacttcttgcaatgtaggtaaagcaagtcatgatt 7

                 
Query: 543 ttagga 548
           ||||||
Sbjct: 6   ttagga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)