BAC Information

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BAC

Clone NameMSMg01-123H16
Chromosome3 (Build37)
Map Location 110,831,072 - 110,831,398
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712, LOC625585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-123H16.T7 (MSMg01no123_h16.b1)MSMg01-123H16.TJ (MSMg01no123_h16.g1)
ACCAG333071AG333072
length1,3071,319
length of high quality
(start - end)
268 (127 - 394)327 (129 - 455)
definitionCHROMAT_FILE: MSMg01no123_h16.b1 PHD_FILE: MSMg01no123_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:16 2005CHROMAT_FILE: MSMg01no123_h16.g1 PHD_FILE: MSMg01no123_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:33:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATATNNNGAACATTGGGCCTATAGACTCACTAAGGGAGAGGATCCGC
GGAATTCTGGATAATATTTTTGACGTTTAGAGTTGGCCCTATCCCTCAAC
TGAGGGCCATGCCCCTTTAAAGGATATGATCTCTACCGGTTCATTCTATC
TCCCCTTTGTTGTGTATTTTGACTAAAATCCTCCCTGTTGAGTACTGGGA
ACCTCTTGGGTCCCTGGCATCTTGGACTTTCTAGTGGCTACTTCCAGTTT
TCCCTCCCCAACTAGTGCATTAACTTTTTTTTTTTTTCTGATGCATCCCA
TATGGTCTTCCTTGATCACCTTCAAATTCATGGCCTCTTTTATTTTCCTA
TTAACTGCTCTGGCATACACATCTGTTCTGGTACAGTATACAAAAGTGAA
ATGTTTTTTTCTTTCTGGTATGAGATTGTTAAATCAATATTATGGAACAG
CTGTATTCTTTTATTACCACCCAGTTTACTACATTGTGACCATAAAAAAC
GAGGTCTTATCAACTAATTTGAAATAAATGTTTTATCTCTTTATCAGTCA
TTATCATGATTTTCCCTTATTCTGTCTCCCTTGATTATTGAATAAACTCT
TTACGTTTATCTATCCATATGTTTGTTCTCTGTTCTACAACTCTACCAAT
TTTATTTAATTACTTGTTTCATAATTCATCTATCAACTTTCCTCACTTGA
TTTTTAATTTAATCTCTATTGCTTTTTCTTTTCTCCCATTGTTCTTTCAT
TTCCTTTCGTCTTTATTTCTCTTCTTCATCTCTTCTTCTTTCTCCTTTCT
CTCTCTTCCTTCATTCCTTGTTTCTCTCTTTCTCTTTCCTCACCTTTTCT
TTCTCTTTCCCTTCTTCTCCCTCCTCTCCTCTCTCTCTCTCCCTCTTCTT
TTCTTTCTTCTTCTCTCTATTTCATTATCTTCCTCCTCCCTTCTATTTCT
TCTCTTTTCTCCTCTTCTCCTTTCCTTTATTATCTTTATTACTTTCTTTT
CCTCTTCTCTTCTTTCACTCTCTTCTCTTACTTTCTCTCCTTCCTCCCTT
TTCCCTCCTCTCATTCTTTTATTCACTTCTTTCTCTCTTTTTCTTTCTTT
CATCCTCTTCTTCCTTTTCCCTTCAATCTTCTTTATTCTCTTTCACTTCT
CTTCTCCTCATTCTTCCTTCCTCTCTCCTATCTCCTCTAGTCTTTCCATC
TCTCATTTCACATCTCTACCTCTTCTTCACCCCTACTCTTTTCTCCCCTT
CCTTGTCTCATCCTTCCTTCCNTATTTCTTCACTCTCTCATCTCTACTCT
CTCCAAT
TATTTCCTNAAAGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTTTTAAACTACATCGAGGTTTAATATT
TAAACAGTGAGTCCTTTAAACAATGCCTACTGAACATTTCATGTTTATTT
AAGTAAGAACTTTTTCAGTTTCTTTAATTATTATTTATATATTTATGCAT
GTAGATCTTAAAACTGTGAGTTATACTTATGTTGATTTAAGAATTTCCCA
TTGTAGAAGACTAGAGAGATGTCTGGGCAGACAAGAATACTTTATATTCT
TATAGAGAACCCAGTTTTTTTATACCTCGCATGCCAACTCTTTGTTCACT
ACTATTTGCAATTAAATTCTTGGGAATCAAATGTCTTACTTTGGTTTTCA
GGGAACTTGCATACACAGTGTGCATGTACATCTTTACAGGCACACAAATA
TATATATTTTTTTCTACTGAGGAAATGATAGCCAACAACACACTATGGCT
TCTACATGAGTCTATATTCTTGTACAAATCTACTCGCACAGGCATGAACA
AATCCCCCTTAGCAAGACCCCCCAAAGCTACTTAGAAACCACAGCCAAAA
TCCCACATACTTTCACATTCCAATTGTTATCTATGATGTTAGGAAAAAGA
ATTGACCTTTGAGCATTCTCATTATTTTTAGTAATTTTATTATAGACAAT
AATGCTATCTGTATATAAATTGTAGCTCATTGGTTTTTGTTTCTTTTTGA
CACAGATACTGACTATTGTGTAACATACTATATTAGAGTAGCCTGGCCCC
TCACTCCGTAACTTTACTATCCCTTCCCAGTGGTGAGATAATATTCCTGA
ACCACTACATTCCAGTTCCTAACCTTATTCTTTTAATTTTACTTATTGAT
TGCCCAATCCCCTTGCCCTTACCGAAACCTTGTGGTAAATACCCTGATGT
TCAATCAAAAATTGTTTCAAAAAAATAATCCCATTTTAACCTACTCAGCT
TTAAGCGAATCCCAATTATTCATTTTAACCGCCCTTTTACAAGTAACTTA
TCAAAACATTTCTTCTCCCAAACTGCGATTTTCATTGGCTAAAAAATCTT
CCATCTTTATACTCCCCGGAATTTTGCTTCCCCTTTCTCTCCCCGAACTA
TCTATATGACTGTCCTCTTGTTCCCAATATTTTTCCCCCCCCCTCTTTCT
CATGTGCGGTCCCACCCACTTTCACAACTCTTTCCCTCTCCTGCGTCTTC
ACCTTCTACGGGCCTTTCTAAACTCTCTCCCTCTACATCAACTGCCTCTC
CCTCTCTCACCCAATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no123_h16.g1 MSMg01no123_h16.g1 CHROMAT_FILE:
MSMg01no123_h16.g1 PHD_FILE: MSMg01no123_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:16 2005
         (327 letters)



>mm_chr3_110830872_110831598
          Length = 727

 Score =  632 bits (327), Expect = 0.0
 Identities = 327/327 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaacatttcatgtttatttaagtaagaactttttcagtttctttaattattatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaacatttcatgtttatttaagtaagaactttttcagtttctttaattattatttat 260

                                                                       
Query: 61  atatttatgcatgtagatcttaaaactgtgagttatacttatgttgatttaagaatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttatgcatgtagatcttaaaactgtgagttatacttatgttgatttaagaatttcc 320

                                                                       
Query: 121 cattgtagaagactagagagatgtctgggcagacaagaatactttatattcttatagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattgtagaagactagagagatgtctgggcagacaagaatactttatattcttatagaga 380

                                                                       
Query: 181 acccagtttttttatacctcgcatgccaactctttgttcactactatttgcaattaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccagtttttttatacctcgcatgccaactctttgttcactactatttgcaattaaatt 440

                                                                       
Query: 241 cttgggaatcaaatgtcttactttggttttcagggaacttgcatacacagtgtgcatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgggaatcaaatgtcttactttggttttcagggaacttgcatacacagtgtgcatgta 500

                                      
Query: 301 catctttacaggcacacaaatatatat 327
           |||||||||||||||||||||||||||
Sbjct: 501 catctttacaggcacacaaatatatat 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)