Query= MSMg01no123_l01.b1 MSMg01no123_l01.b1 CHROMAT_FILE:
MSMg01no123_l01.b1 PHD_FILE: MSMg01no123_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:45 2005
(330 letters)
>mm_chr3_89738880_89739611
Length = 732
Score = 555 bits (287), Expect = e-162
Identities = 321/333 (96%), Gaps = 4/333 (1%)
Strand = Plus / Minus
Query: 1 ttgccacttcagtctctgagctcctacacaccctgtttaggtgatgctgagggccatacc 60
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 690 ttgccacttcagtctctgagctcctatacaccctgcttaggtgatgctgagggccatacc 631
Query: 61 ctcctggtgtcctccacccctctggctcccataatttccttctcctctcatgcatgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctcctggtgtcctccacccctctggctcccataatttccttctcctctcatgcatgcttc 571
Query: 121 cccaagctctgagggtgagggactcattggagacctccaagctgggctctcttttctaat 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 570 cccaagctctgagggtgagggactcattggagagctccaagctgggctctcttttctaat 511
Query: 181 -atttgactatgagtatccactcccatcagcctctctcagtctgccactcggggcaggcc 239
| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ga-ttggctgtgagtatccactcccatcagcctctctcagtctgccactcggggcaggcc 452
Query: 240 taggaggcct--gagccattttagggaagatctctcttttgtctcccaagcgccaatgga 297
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 451 taggaggcctaggagccattttagggaagatctctcttttgtctcccaagcgtcaatgga 392
Query: 298 agagatgaacacactaggtttgctcagtatctc 330
||| |||||||| ||||||||||||||||||||
Sbjct: 391 agaaatgaacacgctaggtttgctcagtatctc 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 732
Length adjustment: 9
Effective length of query: 321
Effective length of database: 723
Effective search space: 232083
Effective search space used: 232083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_l01.g1 MSMg01no123_l01.g1 CHROMAT_FILE:
MSMg01no123_l01.g1 PHD_FILE: MSMg01no123_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:33:45 2005
(335 letters)
>mm_chr3_89637422_89638152
Length = 731
Score = 563 bits (291), Expect = e-165
Identities = 320/331 (96%), Gaps = 4/331 (1%)
Strand = Plus / Plus
Query: 1 cttctgcaggaccgttcagtgctaaggtgtgaagcctgtctctctggagcttgtaaaagc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cttctgcaggaccgttcagtgctaaggtgtgaagcctgtctctctgaagcttgtaaaagc 260
Query: 61 tccctgaggccagcaagtaggtctcgggttcactttgactgggaggtactggattgttta 120
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 tccctgaggccaggaagtaggtctcgggttcgctttgactgggaggtactggattgttta 320
Query: 121 gctaccaggagctgggaagactgggagctgccagcctgtgctggaagaattctcttcaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gctaccaggagctgggaagactgggagctgccagcctgtgctggaagaatcctcttcaca 380
Query: 181 cactgaagcccagatactctccacttcccactgcccacctgccagcctctaactcacaag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgaagcccagatgctctccacttcccactgcccacctgccagcctctaactcacaag 440
Query: 241 caagactttaggcaaattgtcacaagtcaagtaccatgatttataaaaaaagtttgtctg 300
||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct: 441 caagactttgggcaaattgtcacaagtcaagtaccatga---a-aaaaaaaggttgtctg 496
Query: 301 acagagacatgtgatcaagtgcgaaaattgt 331
|||||||||||||||||||||||||||||||
Sbjct: 497 acagagacatgtgatcaagtgcgaaaattgt 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 731
Length adjustment: 9
Effective length of query: 326
Effective length of database: 722
Effective search space: 235372
Effective search space used: 235372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
