Query= MSMg01no124_a04.b1 MSMg01no124_a04.b1 CHROMAT_FILE:
MSMg01no124_a04.b1 PHD_FILE: MSMg01no124_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:31 2005
(248 letters)
>mm_chr3_115405084_115405733
Length = 650
Score = 369 bits (191), Expect = e-107
Identities = 223/237 (94%), Gaps = 10/237 (4%)
Strand = Plus / Minus
Query: 18 gaattcagtc-catgtttgctcacaaccccctcccc----t-cccccagccccattgacg 71
|||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 450 gaattcagtcacatgtttgctcacaaccccctcccccccatcccccccgccccattgacg 391
Query: 72 ggctcttccccttaaagttcaccatcttctcgaaggtaaagtgtcttcactactttgtac 131
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 390 ggctcttcctcttaaagttcaccatcttcttgaaggtaaagtgtcttcactactttgtac 331
Query: 132 aaaagagaaaatatttatttctaatttcagagtttctcttgctcctgtctagacaacctc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaaagagaaaatatttatttctaatttcagagtttctcttgctcctgtctagacaacctc 271
Query: 192 agatttaaaaaaaaaaaactcagatttagatcgtctgtaatgctatgttctaaaata 248
||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 270 agatt-aaaaaaaaaa---tcagatttagatcgtctgtaaagctatgttctaaaata 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 650
Length adjustment: 9
Effective length of query: 239
Effective length of database: 641
Effective search space: 153199
Effective search space used: 153199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no124_a04.g1 MSMg01no124_a04.g1 CHROMAT_FILE:
MSMg01no124_a04.g1 PHD_FILE: MSMg01no124_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:31 2005
(556 letters)
>mm_chr3_115245514_115246469
Length = 956
Score = 998 bits (516), Expect = 0.0
Identities = 546/556 (98%)
Strand = Plus / Plus
Query: 1 atacatgcccgtgttcacatgtatgtaggcatctgagtgtggggaggggtatgcacatat 60
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 atacatgcacatgttcacatgtatgtaggcatctgagtgtgtagaggggtatgcacatat 260
Query: 61 atgcaccaatatgcaagggccagaggttgacatcaggtgtcttcatcaatctccctgtcc 120
||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct: 261 atgcaccaatatgcaagggtcagaggttgacatcaggtgtcttcatcagtttccctgtcc 320
Query: 121 tttgtgtactgaggtaggttttctcagttgaacccaaggctttttgattgagttaatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtgtactgaggtaggttttctcagttgaacccaaggctttttgattgagttaatgca 380
Query: 181 gctggtcatcaacccaccccagggatctatcctgtgtttcctcagagagccaggattacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggtcatcaacccaccccagggatctatcctgtgtttcctcagagagccaggattacc 440
Query: 241 aatgggccatcaatctgcccagcttttacttgagttctggttatccaaactacactcctc 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 aatgggccatcaatctgcccagcttttacttgagttctggggatccaaactacactcctc 500
Query: 301 atgcttattcagcaagttattttcccactgacatatctccctggcctcctctacaccatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcttattcagcaagttattttcccactgacatatctccctggcctcctctacaccatc 560
Query: 361 tgaaatctaaagaaggaagcacatcgtatgtaaccgaggatgggaggagttttcatttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaatctaaagaaggaagcacatcgtatgtaaccgaggatgggaggagttttcatttta 620
Query: 421 tctaaaaagtagacagggaccacttgctataaacaataaatccctctccactattttctt 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tctaaaaagtagacagggaccacttgctataaagaataaatccctctccactattttctt 680
Query: 481 gctctgctcgttaaagtgaagaacaaggacatgagaaggacacagcctcagaggctgaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctctgctcgttaaagtgaagaacaaggacatgagaaggacacagcctcagaggctgaaa 740
Query: 541 gtaatccacacaggat 556
||||||||||||||||
Sbjct: 741 gtaatccacacaggat 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
