Query= MSMg01no124_i21.b1 MSMg01no124_i21.b1 CHROMAT_FILE:
MSMg01no124_i21.b1 PHD_FILE: MSMg01no124_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:48 2005
(643 letters)
>mm_chr3_157517866_157518909
Length = 1044
Score = 717 bits (371), Expect = 0.0
Identities = 386/391 (98%), Gaps = 1/391 (0%)
Strand = Plus / Minus
Query: 1 taaccactgagccatgtatagcctgaaaacttcttattttcagttgatcaaaaagatgat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 391 taaccactgagccatgtatagcctgaaaatttcttattttcagttgatcaaaaagatgat 332
Query: 61 gatatgttcaaattagt-ccaacaaattagtccaacagtatgttcagaaattttatctta 119
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 331 gatatgttcaaattagtcccaacaaattagtccaacggtatgttcagaaattttatctta 272
Query: 120 taaatatgttcagtggatgacagtgttggaaggggcagaaggaaaaccaagatgttaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 271 taaatatgttcagtggatgacagtgttggaaggggcagaaggaaaaccaagatgttagaa 212
Query: 180 gtcacttgaactatttgaaagatggtgtggaccagctgtaaatgtattctgaagattcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gtcacttgaactatttgaaagatggtgtggaccagctgtaaatgtattctgaagattcaa 152
Query: 240 ggagagcagctgtagaaagtacttaaaaagtatagtcaatatagtaagagaggaggaaaa 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 151 ggagagcagctgtagaaagtacttaaaaagtatagtcagtatagtaagagaggaggaaaa 92
Query: 300 acagaatcacataaaatgctcagttagcgagaggaggccaaaacagtacaaaacaaaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 acagaatcacataaaatgctcagttagcgagaggaggccaaaacagtacaaaacaaaaac 32
Query: 360 aaatgcagaagcaacaaaaaccaaaaccaaa 390
|||||||||||||||||||||||||||||||
Sbjct: 31 aaatgcagaagcaacaaaaaccaaaaccaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no124_i21.g1 MSMg01no124_i21.g1 CHROMAT_FILE:
MSMg01no124_i21.g1 PHD_FILE: MSMg01no124_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:49 2005
(561 letters)
>mm_chr3_157393017_157393977
Length = 961
Score = 1000 bits (517), Expect = 0.0
Identities = 555/571 (97%), Gaps = 11/571 (1%)
Strand = Plus / Plus
Query: 1 ttatggaattctgagaccatgatttgcctgccagcttaagttacaagactaatgctggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatggaattctgagaccatgatttgcctgccagcttaagttacaagactaatgctggtg 260
Query: 61 ataaatatttgaggaacacagacatctccacatcagagtcaattgtgcttgtactcatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaatatttgaggaacacagacatctccacatcagagtcaattgtgcttgtactcatat 320
Query: 121 ggaagttcagaaatgctttaaagacaaatgtaagggggatgcatcattctggaaatagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagttcagaaatgctttaaagacaaatgtaagggggatgcatcattctggaaatagca 380
Query: 181 atcctacagtatgattggtatcagtatgaggctgaagagagccactggacaggactactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcctacagtatgattggtatcagtatgaggctgaagagagccactggacaggactactg 440
Query: 241 ccttttattcaacattatggtgtcctctgtggatctagaacagtttctatcaggtgacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttttattcaacattatggtgtcctctgtggatctagaacagtttctatcaggtgacac 500
Query: 301 aggagactgccctttattactctcagctctgtgtgcttttggtgctagcttgcataagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagactgccctttattactctcagctctgtgtgcttttggtgctagcttgcataagca 560
Query: 361 ctccattttgattctgagaatgtccatacttccacaattaattttgaggcctgtcttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctccattttgattctgagaatgtccatacttccacaattaattttgaggcctgtcttttc 620
Query: 421 ttccttccttccttccttccttcct-ccttccttccttccttccttccttccttccttcc 479
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 621 ttccttcctttcttccttccttccttccttccttccttccttccttccttccttcct-cc 679
Query: 480 ttccttcct-ccttccctccttccttccttccttccttccttcctcc-tc--tccctcct 535
|||| |||| |||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct: 680 ttccctccttccttccttccttccttccttccttccttccttcctccctccctccctccc 739
Query: 536 tccttcc-----ttccttccttccttcctcc 561
||| ||| |||||||||||||||||||
Sbjct: 740 tccctccctcccttccttccttccttcctcc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
