Query= MSMg01no125_e18.b1 MSMg01no125_e18.b1 CHROMAT_FILE:
MSMg01no125_e18.b1 PHD_FILE: MSMg01no125_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:18 2005
(556 letters)
>mm_chr3_95981747_95982701
Length = 955
Score = 1021 bits (528), Expect = 0.0
Identities = 547/554 (98%), Gaps = 3/554 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactaggtatacccggctggccatgaactcagatctgcctctgctggggttgaa 63
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactaggtagaccaggctggccatgaactcagatctgcctctgctggggttgaa 263
Query: 64 gacaccatgctcagaggaagcttcagctcctgagtgttattaccatggctttcatctgga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacaccatgctcagaggaagcttcagctcctgagtgttattaccatggctttcatctgga 323
Query: 124 gccatgggaatgtcttaagtaattgctagacagggtgagtgaggaaagcagatgttcagt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gccatgggaatgtcttaagtaattgctagacagggtgagtgaggaaagcagatgttcagt 383
Query: 184 gaatgacgcttagatcttagtcctaattgcgttcacattctccattcttccactctaaca 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaatgacgcttagatcttagtcctaattgcgttcacattctccattcttccactctaacg 443
Query: 244 tttatggttcctgcaaaggctttgctggtgaccaggatgaacacagcaagtgttaaactg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttatggttcctgcaaaggctttgctggtgaccaggatgaacacagcaagtgttaaactg 503
Query: 304 tcagaa-atctaacttggtccgaatgttcaggaagacttcttcggaaaatagtgatgtct 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcagaacatctaacttggtccgaatgttcaggaagacttcttcggaaaatagtgatgtct 563
Query: 363 gtaggtttttggtcggaagatggtcttactagtcagcaatggtggtgcatgcctttgacc 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 564 --aggtttttggtcggaagatggtcttactagtcagccatggtggtgcatgcctttgacc 621
Query: 423 ccggcagaggcgggcaggtgggtctcttgagttcaagaccagtctggcctacatagttcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccggcagaggcgggcaggtgggtctcttgagttcaagaccagtctggcctacatagttcc 681
Query: 483 taggacaagccagagttaagaagatgatctagcctaatcctaacccagaagccttacctg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 taggacaagccagagttaagaagatgatctagcctaatcctaacccagaagccttacctg 741
Query: 543 gttctcaacaggcc 556
||||||||||||||
Sbjct: 742 gttctcaacaggcc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_e18.g1 MSMg01no125_e18.g1 CHROMAT_FILE:
MSMg01no125_e18.g1 PHD_FILE: MSMg01no125_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:18 2005
(623 letters)
>mm_chr3_96090652_96091675
Length = 1024
Score = 1019 bits (527), Expect = 0.0
Identities = 565/579 (97%), Gaps = 5/579 (0%)
Strand = Plus / Minus
Query: 46 ctgagaagggacgatgtaagaggggc-ctaatgtgaacagctattgagaagggacgatag 104
|||||||||| | || ||| |||| ||| |||| |||||| ||||||||||| ||||
Sbjct: 842 ctgagaaggggcaat---aga-gggcgctagtgtgcacagctgctgagaagggacaatag 787
Query: 105 agggcgctagtgtgcacagctgctgagaaggggcaatagagggcgctagtgtgcacagct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 agggcgctagtgtgcacagctgctgagaaggggcaatagagggcgctagtgtgcacagct 727
Query: 165 gctgagaagggacaatagagggcgctagtgtgcacagctgctggcaaaagtcgattttct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gctgagaagggacaatagagggcgctagtgtgcacagctgctggcaaaagtcgattttct 667
Query: 225 ttcacggaagaggagagctttgagagcgagacaggtgtgggccatagtggagattggggt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttcacggaagaggagagctttgagagcgagacaggtgtgggccatagtggagattggggt 607
Query: 285 tgggatgtttcaagtaaaagatataaaaatctccagggccaagatttggcggcctcatac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgggatgtttcaagtaaaagatataaaaatctccagggccaagatttggcggcctcatac 547
Query: 345 ttcctcatactgttgcaaacactgtgggccctcacttttcagattggctgctactccagg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttcctcatactgttgcaaacactgtgggccctcacttttcagattggctgctactccagg 487
Query: 405 cctcccgtagagtcctcacagaaggagaacccctggccttgaggtgtcacggatggaaga 464
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctcccgcagagtcctcacagaaggagaacccctggccttgaggtgtcacggatggaaga 427
Query: 465 ataaactggtgtacaatgtggttttctatagaaatggaaaatcctttcagttttcttcag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ataaactggtgtacaatgtggttttctatagaaatggaaaatcctttcagttttcttcag 367
Query: 525 attcggaggtcgccattctgaaaaccaacctgagtcacagcggcatctaccactgctcag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 attcggaggtcgccattctgaaaaccaacctgagtcacagcggcatctaccactgctcag 307
Query: 585 gcaccggaagacaccgctacacatctgcaggagtgtcca 623
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 306 gcacgggaagacaccgctacacatctgcaggagtgtcca 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1024
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1014
Effective search space: 621582
Effective search space used: 621582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
