BAC Information

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BAC

Clone NameMSMg01-125G04
Chromosome3 (Build37)
Map Location 105,773,155 - 105,773,771
singlet/doubletsinglet
Overlap genenone
Upstream geneCttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77
Downstream geneOvgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125G04.T7 (MSMg01no125_g04.b1)MSMg01-125G04.TJ (MSMg01no125_g04.g1)
ACCAG334490AG334491
length680696
length of high quality
(start - end)
469 (48 - 516)607 (81 - 687)
definitionCHROMAT_FILE: MSMg01no125_g04.b1 PHD_FILE: MSMg01no125_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:25 2005CHROMAT_FILE: MSMg01no125_g04.g1 PHD_FILE: MSMg01no125_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATATCCAGACCATCCGCGGAATTCTTTGTTCATCTCTGAGCCCC
ATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCT
TTATATATATTGAATATTAGTCCCCTATCTGATTTGGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTTTG
CTTTGCAGAAGCTTTGCAATTTTATAAAGTCCCATTTACCAATTCTTGAT
CTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACC
CATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCT
CTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTACAACAA
GGAGATAGAAATGGATCAATTCGCTTTCTTCTACATGATAACCGCCAGTT
GTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTT
TAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCTCT
GGATCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGCA
CCATGCAGTTTTGATCACAATTGCTCTGTAGCACAGATTTAGGTCCGGCA
TGGCGATTCCAACAGAGGTTCTTTTATTCT
CCTTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCTGGAGAGGAGGGATA
ACTGGTAAGTTAGAATGACCACAGTGCATGGTCTTACGGTCTTTGATGTG
GTCCTCCACTTACTGTGGGTTACTTTGATATTCTGTGTGTAAGGAATGAA
TTGTCAAATTCAATGGCTCAGTAAACAGTTCTGGTGGGAGCCAGCCACTG
ATTGTTTGAAAACTCACTCCCTTGTCCCTGTTGTGTTAGACAAGCATTTC
ATTTTGGAGGCATTGTGCTAAAAGCATTAACAATTAGTTTCAAATGAGAA
AGTTCCACTCTAGTAGTAATTTCTCTAGAGTGGATTCTCAGCAATGCAAT
GAAGACTATACTTAATGTATTTTACATCTACATGCTAAGCCTCAGTTCTA
CACATACAACTTACCAGAAATCATTTGACACTGGCCATGCTTAATAAGCT
GGGTGTGTTTGGTTCCAAGGATACGTATTTTCTTACTCTAAAGGCAGATG
ACATAACTTTTGAACCTAAGAGGTAGTCCTGGATCCTTCAGTAAAGAGCT
TACATCAGCCTGGGTATGAGGGCCTGTCTCAAAAAACAATAAGGATGTGA
AACAACTGACTTTAAGATTCGGTGTTATAAAAGTCTTAAGGAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_g04.g1 MSMg01no125_g04.g1 CHROMAT_FILE:
MSMg01no125_g04.g1 PHD_FILE: MSMg01no125_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:25 2005
         (607 letters)



>mm_chr3_105772962_105773971
          Length = 1010

 Score = 1081 bits (559), Expect = 0.0
 Identities = 598/617 (96%), Gaps = 11/617 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   cttctggagaggagggataactggtaagttagaatgaccacagtgcatggtcttacggtc 61
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 194 cttctggagaggaggaataactggtaagttagaatgaccacagtgcatggtcttacagtc 253

                                                                       
Query: 62  tttgatgtggtcctccacttactgtgggttactttgatattctg--------tgtgtaag 113
           ||||||||||||||||||||||||||||||||||||||||||||        ||||||||
Sbjct: 254 tttgatgtggtcctccacttactgtgggttactttgatattctgccattctgtgtgtaag 313

                                                                       
Query: 114 gaatgaattgtcaaattcaatggctcagtaaacagttctggtgggagccagccactgatt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaatgaattgtcaaattcaatggctcagtaaacagttctggtgggagccagccactgatt 373

                                                                       
Query: 174 gtttgaaaactcactcccttgtccctgttgtgttagacaagcatttcattttggaggcat 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gtttgaaaactcactcccttgtccctgttgtgttagacaagcatttcattttggaggcat 433

                                                                       
Query: 234 tgtgctaaaagcattaacaattagtttcaaatgagaaagttccactctagtagtaatttc 293
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 434 tgtgctaaaagcattaacaattagtttcaaatgaaaaagttccactctagtagtaatttc 493

                                                                       
Query: 294 tctagagtggattctcagcaatgcaatgaagactatacttaa---tgtattttacatcta 350
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 494 tctagagtggattctcagcaatgcaatgaagactatacttaagaatgtattttacatcta 553

                                                                       
Query: 351 catgctaagcctcagttctacacatacaacttaccagaaatcatttgacactggccatgc 410
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 554 catgctaagcctcagttctacacatacaacttaacagaaatcatttgacactggccatgc 613

                                                                       
Query: 411 ttaataagctgggtgtgtttggttccaaggatacgtattttcttactctaaaggcagatg 470
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 614 ttaataagctgggtgtgtttggttccaaggatatgtattttcttactctaaaggcagatg 673

                                                                       
Query: 471 acataacttttgaacctaagaggtagtcctggatccttcagtaaagagcttacatcagcc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acataacttttgaacctaagaggtagtcctggatccttcagtaaagagcttacatcagcc 733

                                                                       
Query: 531 tgggtatgagggcctgtctcaaaaaacaataaggatgtgaaacaactgactttaagattc 590
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| 
Sbjct: 734 tgggtatgagggcctgtctcaaaaaacaataaggacgtgaaacaactgactttaaaattt 793

                            
Query: 591 ggtgttataaaagtctt 607
           |||||||||||||||||
Sbjct: 794 ggtgttataaaagtctt 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1010
Length adjustment: 10
Effective length of query: 597
Effective length of database: 1000
Effective search space:   597000
Effective search space used:   597000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)