BAC Information

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BAC

Clone NameMSMg01-126H10
Chromosome3 (Build37)
Map Location 72,187,717 - 72,187,955
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126H10.T7 (MSMg01no126_h10.b1)MSMg01-126H10.TJ (MSMg01no126_h10.g1)
ACCAG335272AG335273
length702706
length of high quality
(start - end)
371 (45 - 415)239 (70 - 308)
definitionCHROMAT_FILE: MSMg01no126_h10.b1 PHD_FILE: MSMg01no126_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:51 2005CHROMAT_FILE: MSMg01no126_h10.g1 PHD_FILE: MSMg01no126_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGATCCCACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCA
AGCATCCTTAATCATCAGAGTAATGCAAATCAAAACAACCCTGAGATTCC
ATCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGCGGAA
GTGCAAGCTTGTACAACTACTCTGGAAATCAGTCTGGCGGTTTCTTAGAA
AATTGGACATAGTACTACTTGAGGATACCGCAATATCTCTCCTGGGCATA
TATCCAGAATATGTTCCAACCGGTAAGAAGGACACATGCTCCAATATGTT
CATAGCAGCCTTATTCATAATAGCCAGAAGATGGAAAGAACCCTGATGAC
CCTCAACAGAGGAGTGTATATAAATAATGTGGCACATTTACACTATGGAG
TACTACTCAGCTATTATCAATGAATGAATTTATGATATTTCATAGGCAAA
TGTCTGGACCTATCGTCATCTTCCCGACTGAGGTAACCCCATCCCTACAC
AACTCTCATGATATGTATCCCCCGATAATTGGTTCATAGCCCGTTACTCT
TTAGAATAGTTAGCATCCATCATATTATTTGCCAAACCCATGAACCCGAA
TG
ATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACCCTGTGGATCCATATAAGACAAATAATA
GGGCTAATCTATAATCTGAGTACCTATTCCCCCACCTTCCACCGTGGTTC
AGTGGTTTTTATTTTATGTTTATTCATCTTTTTATTTTTAATTTGAATGA
ATTTTTAGACAATATGTTTTATTATGTTTTCTATCATCCAGTTCTTCTTA
TATCCCCCCAAAATGCTACCTACAACTGTATTTTCCTTTACTTTCTTTAA
GAAAACAATCTTTATCTGGGAAACAAAAACAATACAAAACAAAATTAAGA
AACACCTACAATTACCGCCATAAAAATAAAGATCAAAACATACAAACAAA
AGGTAAACAAGTTTTAAAAATGCATAAGTAAAGCAAAGGGAGACTAAAAT
CTACAAAAATACTACTGAATTCCTTTCGATTTGTTCAACTGCACTTGTTC
AAGAGAACTGATATTTCATTATTACATTCAGTGAGGATCCATTGTAAAAA
CGGATTATTCTATTGCTAGCATATGATAGCTTCTTGGCTAAGGGTTGGGT
ACTGTGTTTTCTTCTCCTTCTCATTGCCAGGACTTGAACCTGTGCATACT
GTCAACATTTCTGTCAATTCATACATGCATCTTAACATGCAATGTGATAC
ATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_h10.g1 MSMg01no126_h10.g1 CHROMAT_FILE:
MSMg01no126_h10.g1 PHD_FILE: MSMg01no126_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:51 2005
         (239 letters)



>mm_chr3_72187517_72188155
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccctgtggatccatataagacaaataatagggctaatctataatctgagtacctattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccctgtggatccatataagacaaataatagggctaatctataatctgagtacctattc 260

                                                                       
Query: 61  ccccaccttccaccgtggttcagtggtttttattttatgtttattcatctttttattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccaccttccaccgtggttcagtggtttttattttatgtttattcatctttttattttt 320

                                                                       
Query: 121 aatttgaatgaatttttagacaatatgttttattatgttttctatcatccagttcttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatttgaatgaatttttagacaatatgttttattatgttttctatcatccagttcttctt 380

                                                                      
Query: 181 atatccccccaaaatgctacctacaactgtattttcctttactttctttaagaaaacaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatccccccaaaatgctacctacaactgtattttcctttactttctttaagaaaacaa 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)