BAC Information

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BAC

Clone NameMSMg01-126M05
Chromosome3 (Build37)
Map Location 44,448,543 - 44,448,941
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126M05.T7 (MSMg01no126_m05.b1)MSMg01-126M05.TJ (MSMg01no126_m05.g1)
ACCAG335490AG335491
length706705
length of high quality
(start - end)
336 (46 - 381)398 (72 - 469)
definitionCHROMAT_FILE: MSMg01no126_m05.b1 PHD_FILE: MSMg01no126_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:16 2005CHROMAT_FILE: MSMg01no126_m05.g1 PHD_FILE: MSMg01no126_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACTTTAAAACTCCCTGGCCAAGACCTTTTATTAGCTGGTAGACT
TTTAATGACTACTTCTATTTCTTAAAGGGTTATGGGACTGTTTATAGATG
GTTTATCTGATCCTAATTTAAATTTGGTACCTGGTATCTGTCTAGAAAAT
TGTGCATTTCATCCAGATTTCCAGTTTTGTTGAATACAGGCTTTTGTAGT
TGTATCTGAATTTTTTTTAAATTTCCTTGGTTTCTAATGTTATATTTCCC
CTTTCCTTTCTGATTTTTAATTTAGGTATTGTCTTTGTGCCCTCTGGTTA
GTCTAGCTGTCTCCTCTGATTCCGACCAGCAGATAAGAGCGACAGCACTA
TGTTCTTCTCAAAGCAGTTTATTCAGGAATCTTTCAAAATCATGCATGAA
TCTCTCTCGAGAAATCATTCTCTCCAGTAAAAATATATCTACCCAACCTA
CCAAATCGTATCCTCTTATAGATCCTCTTATCCATGCCTCATTCGCCCAT
TCCATGTTTTATCAGTCCATTGGCCTGAATTACCACTCATCCCATGGTCT
GATCTTGCTACATTGTGTACCTGCACATTTCTTACCATGTATGTGCCTTA
TCTTCTTGTATTTGATTATGTCCGGTGCTAGCCTTATCACCCTTCTGCTT
CTTTTC
AATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCATAAAATTACTGTAACTTTCTAGGCT
ATATCAGAGACTGAGTGTATAGAAAGAGAACACCTAATTTTGTAGGTATA
CTCGTGCTTTACTCAAACTAATTTTTAATTAATATTTGAAATGTCATAAA
ACCTGAAGTATCTTTAAAACAACCTATTTGTGTACACTGATATATAATAA
TGAATTGAGTATATTGATGTTGTTTTAAAGTTGAGCAACATTATTTTATT
TATGACCAGTTTTACCTGTCTTAGCATTTTGCATTATTTTTATTTAATAA
TTTCTTATTTTATTTCTTTGCAAGTGCTTTAATCTTATGTATTAAATATT
TATTGATATTATTAATGACATTAAATATATTTTAAAATATTTATTTTTAT
TTAAAAACATTGATTTTATTTAAGAACAATAACATAATTAATTATTTTTG
ATGTCCTACGTTTGTCTATTTAAAAATCACAACATCCTTTAATTTTTTAT
TTCTTTAAAATATTATAATTAATTCTACATAAACATACTTTGTTAAGACT
TTGACATTAACATTTTCTTCTTTAAAAAATTAATATGTACTTCAAACCGT
TTATTTTCCACTCTTCCTATTCATAACCTCTTAGACTAAATTTTCAGTGA
TCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_m05.g1 MSMg01no126_m05.g1 CHROMAT_FILE:
MSMg01no126_m05.g1 PHD_FILE: MSMg01no126_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:16 2005
         (398 letters)



>mm_chr3_44448343_44449140
          Length = 798

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%), Gaps = 1/399 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcataaaattactgtaactttctaggctatatcagagactgagtgtatagaaagagaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcataaaattactgtaactttctaggctatatcagagactgagtgtatagaaagagaac 260

                                                                       
Query: 61  acctaattttgtaggtatactcgtgctttactcaaactaatttttaattaatatttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctaattttgtaggtatactcgtgctttactcaaactaatttttaattaatatttgaaa 320

                                                                       
Query: 121 tgtcataaaacctgaagtatctttaaaacaacctatttgtgtacactgatatataataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcataaaacctgaagtatctttaaaacaacctatttgtgtacactgatatataataat 380

                                                                       
Query: 181 gaattgagtatattgatgttgttttaaagttgagcaacattattttatttatgaccagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattgagtatattgatgttgttttaaagttgagcaacattattttatttatgaccagtt 440

                                                                       
Query: 241 ttacctgtcttagcattttgcattatttttatttaataatttcttattttatttctttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ttacctgtcttagcattttgcattatttttatttaataatttcttattttatttctttga 500

                                                                       
Query: 301 aagtgctttaatcttatgtattaaatatttattgatattattaatgacattaaatatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgctttaatcttatgtattaaatatttattgatattattaatgacattaaatatatt 560

                                                  
Query: 361 ttaaaatatttatttttatttaaaaa-cattgattttat 398
           |||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ttaaaatatttatttttatttaaaaaacattgattttat 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)