BAC Information

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BAC

Clone NameMSMg01-127A08
Chromosome3 (Build37)
Map Location 17,953,701 - 17,953,891
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508
Downstream geneBhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127A08.T7 (MSMg01no127_a08.b1)MSMg01-127A08.TJ (MSMg01no127_a08.g1)
ACCAG335680AG335681
length706710
length of high quality
(start - end)
561 (45 - 605)191 (76 - 266)
definitionCHROMAT_FILE: MSMg01no127_a08.b1 PHD_FILE: MSMg01no127_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:38 2005CHROMAT_FILE: MSMg01no127_a08.g1 PHD_FILE: MSMg01no127_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATCAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTT
CAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG
ATGCTGGATAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATACTCCACTATGT
TCATAGCAGCCTTACCCATAATAGCCAGAAGCTGGAAAGAACCTAGATGC
CCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGA
GTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAAT
GGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACTTCAGAA
AAATGA
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATATCTCCCCGTTAATAGCACGTC
TGCATTTATAGATGGAACCTGGGGGCTGGGGGTAGGGGTGAGGTCCCTGC
TGGCTTGTCTCGAATTTACCCTAGATTTTCAGCTAGTATGTCAGCAAAGT
AAGAGCCAGTCCAGATTTTCTCAGCACCACTTTTCCCACAGCTCTCCACT
GTCCATTTCCTATATAGATGGCAAAAAAATCCAACAATTAAAGAAAGCAA
CAAAATGATGACCAAGTTGCTTACATATTATCGTTTGACTTACAACTCGG
AGGCGCCGGAGTGCTGTAGGCCCTTGTCGACCTCTCCCTGCTGTTCACTT
GTCCTTTTTGACACTTTCCCTCCCCCCTTTACTAATTTATACCCCTTTTA
CTCTCTACTTTACTTTCACAATCATCCTTCTTGCCTCTCTTCCCCTTCTC
CTCCATCTGCTTTACTTCTTCAACATCTCTCGCGACCCTCTTCCGTTCTC
TTTTCTTCCCCTCCCTTTTGTCCACCCTCCTTCCCCTTTCTTCCTTTTCC
CCACTTCCTTTCTCCTCTCTTCTTTTTTCATTCCCTTTTCCCCTTTTTTT
TTTTTTCCCTTCTTTTTTTTATAACACCCCCTTATTTTCTCTTTACACTT
CCCCATCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_a08.g1 MSMg01no127_a08.g1 CHROMAT_FILE:
MSMg01no127_a08.g1 PHD_FILE: MSMg01no127_a08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:38 2005
         (191 letters)



>mm_chr3_17953501_17954091
          Length = 591

 Score =  308 bits (159), Expect = 2e-88
 Identities = 183/191 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatctccccgttaatagcacgtctgcatttatagatggaacctgggggctgggggtag 60
           |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatatctccctgttaatagcatgtctgcatttatagatggaacctgggggctgggggtag 332

                                                                       
Query: 61  gggtgaggtccctgctggcttgtctcgaatttaccctagattttcagctagtatgtcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gggtgaggtccctgctggcttgtctcgaatttaccctagattttcagctagtatgtcagc 272

                                                                       
Query: 121 aaagtaagagccagtccagattttctcagcaccacttttcccacagctctccactgtcca 180
           || | ||||||||  |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 271 aatgcaagagccaacccagattttctccgcaccacttttcccacagccctccactgtcca 212

                      
Query: 181 tttcctatata 191
           |||||||||||
Sbjct: 211 tttcctatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)