BAC Information

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BAC

Clone NameMSMg01-127A16
Chromosome3 (Build37)
Map Location 126,512,475 - 126,512,640
singlet/doubletsinglet
Overlap geneCamk2d
Upstream geneUgt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127A16.T7 (MSMg01no127_a16.b1)MSMg01-127A16.TJ (MSMg01no127_a16.g1)
ACCAG335696AG335697
length704711
length of high quality
(start - end)
167 (183 - 349)---
definitionCHROMAT_FILE: MSMg01no127_a16.b1 PHD_FILE: MSMg01no127_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:39 2005CHROMAT_FILE: MSMg01no127_a16.g1 PHD_FILE: MSMg01no127_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTTTTTCCAATAGATGGGATTAACCTTCATTTTGAGATTAAGTCTGAA
TGCTACTCGCATTACACGAATGCATGGCCGTTTTTCCCCCTTTGGTTTTG
TATGTGTGGAGACTCTGGACATTAACTAGTTTATCTCTTTGGTTTAAATA
ATAGATATGGGATATATGCATATAAATAGATGGCTTTCTAAAAATACCAA
ATCTATAAATGGACACTGACTGGAATTTTTTTTTAACTATCCTCCAAACC
CTGTTTTCCATTCTTTGAACATACAGCTATTAACTGGAAGGTTGGTCCTT
GTTATTTTCACCCCCGCCCCTTTAATCATTCCAAGTGGAAAATGAGTACT
TACAACCACCACAATATATCTTTACTAGAAAGCGGTTCGTTACTGAAGTG
TAATAAAAGTCTTTATGAAGCTCCTGTAGGAAGCGTCTCCCCTCCAGCAG
TATCAGTACACTTGCGAATGTGCTTGCTACTCCCCACCTTCATTTGCAGA
CTCTCAATGATCTTTTGTCTTTTCCTTGTGGGAAGATATTTTGTAACCTG
TTCTGACGTAAGAATTATTGATAAAAAAATCAATAGAATGATTGAAAATA
ACTCTAATTGACCTTGAAAACATACTATGCCTTACGATCTCTGCGCCCTA
AAGA
CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAAAAGGCCTGGGGAAGGTGATGAG
GATCCATAAAAATAAAATAAGGCTAGCGGCAGTTGGCTCAGCATGTTAAG
TGCTGCCTCACTGCCTGATGACCAAGTTGAATCTCTAAAATCTACATAAA
AAGTTGGATGTGCTGGTACATATCTGTAAGTCCTGCACTCTTGTGAAAAG
ATGTCAGGGAGAGATAGGAGACTCACCACATAGCTCATAGCCAGCTATTC
TGAAGTACATACCATAACAGTAGAAACAACAGAAGAGACTCAGTCTCCAG
TCGACGAGCGAGCACTTGTATGGCTCCATGATTCATAAAAGAATGATACT
CACAAAGTATGTAAGAGCACCCCACCCTTTATTCAATATAAGTCTGGCAT
GTTGTCCTATGCGATTTACTAGTATGAAGATCCTCGGGTGAGCTCGTAGG
TACAATTTCGAGCACATTAGGTTAACTTCCGCGACAAATCTGTGATATTT
ATTCTAACAGTCTGCTCCTATATTTAGGAACACTTCACAGTCCTTGCTTG
TTCCAGCGCCCTCTCTCGTCACTACATATTGTTTTCGATTAATCCTGAAT
ACTGTTTTCGACTCATTGTCCTTGCTCCAAGCCAGTTTGCTGTTTCACAT
ACTTATAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_a16.b1 MSMg01no127_a16.b1 CHROMAT_FILE:
MSMg01no127_a16.b1 PHD_FILE: MSMg01no127_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:39 2005
         (167 letters)



>mm_chr3_126512275_126512841
          Length = 567

 Score =  275 bits (142), Expect = 1e-78
 Identities = 160/166 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctctttggtttaaataatagatatgggatatatgcatataaatagatggctttctaaa 60
           |||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct: 201 atctctttggtttaaatattatatatggtatatatgcatataaatagatggctttctaaa 260

                                                                       
Query: 61  aataccaaatctataaatggacactgactggaatttttttttaactatcctccaaaccct 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aataccaaatctataaatggacactgactggaattttttttaaactatcctccaaaccct 320

                                                         
Query: 121 gttttccattctttgaacatacagctattaactggaaggttggtcc 166
           |||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 321 gttttccattcactgaacatacagctattaactggaaggttggtcc 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)