Query= MSMg01no128_e11.b1 MSMg01no128_e11.b1 CHROMAT_FILE:
MSMg01no128_e11.b1 PHD_FILE: MSMg01no128_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:19 2005
(643 letters)
>mm_chr3_65577095_65578140
Length = 1046
Score = 1048 bits (542), Expect = 0.0
Identities = 604/643 (93%), Gaps = 31/643 (4%)
Strand = Plus / Plus
Query: 5 gaattctctcatttctttaaa--tattcatttctttactgtccaca--tttcacttaaat 60
|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctctcattt-tttaaaaatattcatttctttactgtccacaaatttcacttaaat 263
Query: 61 tttatgaattgttgtttcttaaaatatctagagttcaaaacagagtgcttttgaaatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttatgaattgttgtttcttaaaatatctagagttcaaaacagagtgcttttgaaatgtt 323
Query: 121 gagtatgttttatgataatgagtaagaaatattggaaatcaaatgataagaacatggcct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 gagtatgttttatgataatgagtaagaaatattggaaatcaaatgataagaaaatggcct 383
Query: 181 tataaaatgcccaatggtggggaagtggccaagcacttactgtgtaaaatcctgcatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataaaatgcccaatggtggggaagtggccaagcacttactgtgtaaaatcctgcatttt 443
Query: 241 gaatgcccagtgcccagttaaagccaggcatgtagcacctggctataaccttagtgtttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaatgcccagtgcccagttaaagccaggcatgtagcacctggctataaccttagtgtttc 503
Query: 301 tgtgatgagagccaggcaggagaacctttagaatccatagccagcctgacatacgtgaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgatgagagccaggcaggagaacctttagaatccatagccagcctgacatacgtgaat 563
Query: 361 gcaaagcaacagatgctatcgaaaacatggtaaaagacaaggacctccacatatacacta 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 564 gcaaagcaacagatgctatcgaaaacatggtaaaagacaaggacctccacatgtacacta 623
Query: 421 tgacacatacatgcctacacacacacacacacacacacacacacacacacacacacacac 480
||||||||||||||||||||||| |||||||||||||
Sbjct: 624 tgacacatacatgcctacacacatacacacacacaca----------------------- 660
Query: 481 acatcttagacagagagagaaacagagagaggggggaaagagaggtaatacacacatata 540
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 661 ---tcttagacagagagagaaacagagagaggggggaaagaaaggtaatacatacatata 717
Query: 541 aaaagtacccagagcagtatttgttttanaaaataatttacttcaggaatttgaaagact 600
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 718 aaaagtacccagggcagtatttgttttaaaaaataatttacttcaggaatttgaaagact 777
Query: 601 atcttatatgtaaacatggtatgtctataattataatgctaaa 643
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 attttatatgtaaacatggtatgtctataattataatgctaaa 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1046
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1036
Effective search space: 655788
Effective search space used: 655788
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_e11.g1 MSMg01no128_e11.g1 CHROMAT_FILE:
MSMg01no128_e11.g1 PHD_FILE: MSMg01no128_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:19 2005
(592 letters)
>mm_chr3_65593332_65594323
Length = 992
Score = 919 bits (475), Expect = 0.0
Identities = 482/485 (99%), Gaps = 2/485 (0%)
Strand = Plus / Minus
Query: 108 ataagaaaatcgtctttgggtgtgaggcagaggcactggctctgactgcatgcacagcca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 ataagaaaatcgtctttgggtgtgaggcagaggcactggctctgactgcatgcacagcca 933
Query: 168 tctttaagctggagcagaggaagtaaagctaaacgggcaagttcagggtggcaaggagag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 tctttaagctggagcagaggaagtaaagctaaacgggcaagttcagggtggcaaggagag 873
Query: 228 gtgacagcaggaaacacacatacacacacacactctcgtgcctgtgtgtgtgtgtctgtg 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 872 gtgacagcaggaaacacacatacacacacacactctcgtgcctgtgtgtgtgtgtc--tg 815
Query: 288 tgtgtgtgtgtgtgtttgtgtggtgtttctctggacatttctcagctgcagactcacctc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tgtgtgtgtgtgtgtttgtgtggtgtttctctggacatttctcagctgcagactcacctc 755
Query: 348 ctaatttgagttaggcactgacaattcttaaattttatctgcagctcagataaatttgag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ctaatttgagttaggcactgacaattcttaaattttatctgcagctcagataaatttgag 695
Query: 408 tatgactcatggacccaactttccacccgactgctgttttattgaaataatttctcaggc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tatgactcatggacccaactttccacccgactgctgttttattgaaataatttctcaggc 635
Query: 468 cttacacctgaatcctcatgtcctacaatacaaatgcttatttttggctcacagaatgtg 527
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cttacacctgaatcttcatgtcctacaatacaaatgcttatttttggctcacagaatgtg 575
Query: 528 ccatctgctgttctcctccacaggtactgtttcaggatcccaactttaagagcaagtcct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ccatctgctgttctcctccacaggtactgtttcaggatcccaactttaagagcaagtcct 515
Query: 588 acctg 592
|||||
Sbjct: 514 acctg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
