BAC Information

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BAC

Clone NameMSMg01-128F01
Chromosome3 (Build37)
Map Location 72,691,980 - 72,692,143
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128F01.T7 (MSMg01no128_f01.b1)MSMg01-128F01.TJ (MSMg01no128_f01.g1)
ACCAG336622AG336623
length718713
length of high quality
(start - end)
492 (43 - 534)169 (137 - 305)
definitionCHROMAT_FILE: MSMg01no128_f01.b1 PHD_FILE: MSMg01no128_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:22 2005CHROMAT_FILE: MSMg01no128_f01.g1 PHD_FILE: MSMg01no128_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAGGTCCATACCTAAACATGATAAAAGCAATATACAGCAAACCAGTAG
CCAACATCAAAGTAAATGGAGACAAGCTGGAAGCAATCCCACTAAAATCA
GGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATTGTACT
TGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATAC
AAATTGGAAAAGAGGAAATCAAATATCACTTTTTGCAGATGATATGATAG
TATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTGATA
AACAGCTTCGGTGACGTAGCTGGATATAAAATAAACTCAAATAAGTCAAT
GGCCTTTCTCTATACACAGAATAAACAGGCTGAGAAAGAAATTAGGGAAA
CAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGACT
CTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAATCTCTAAA
GAAAGAAATTAAAGAAGATCTCACAAGATGGAAAGATCTCCCATGCTCAT
GGATTGGCAGGATCAACATTGTACAAATGGCCATCTTGCCAAAAGCATCT
ACAGATCCCATGTATTCCCCATCAAAATTCCCAATCAATTCTTTCACGAA
TTGGAAGGAACATTTTGC
ATATGGTAGCCTGGAGGCGCCTGTTTCGGAGGGGGGNGAACNANAGAAGG
TTGCTAGAGGCAAGGCCANGGAGGNGAGAGCAGGCGGGGGNGCGGGCCAA
CACCTTCTTACCAGCAAGAGGAGAGGGAANGAGANAGGGGACTCCTAAAG
GGGGACAACATTTGAAATGTAAATAAATTAAATATCAAAAAAAAAACTTC
AAAAAAATGAGTCTCTACATCCAGATTATTTAAGAGAACACTATTTTCTT
CCCTGGTGAAGATGTGCAACCAAACAAAGAAAATGATTTTTATTAAACAT
TGGAACTATGTTTTTTTTATCGCAAGCACCAACACAACGCCAACAGGAAA
TGTATTTTCCCCCGCACCAATTAAGTCATGGCGCAAGAGTTCTTGTATGA
GCACTAATACCCAGTTAAGAAAAGATATGACCAAGATCATTCAACTTTCT
TCTTTGCCATCTGTCCATAAAGAACTATATTGTGCACTGAATGATCTGCC
GGTAATTTGTTCCAACACTGAATTTCCGGCAGTATTTGATCGCTTTGATT
AAAACATATTGCCGCACTCCCCCATTTAAGCTTCCAAATCTTGAAAGCAA
TTAATCTTTTTTGATAAATTTTGGGCAAAACCTTTATACCAAAGGTGTCC
TACCTTTATTTTTTGTTTCGTAATGGACGTCCACTCACCACCAAATTATT
TCCCGCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_f01.g1 MSMg01no128_f01.g1 CHROMAT_FILE:
MSMg01no128_f01.g1 PHD_FILE: MSMg01no128_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:22 2005
         (169 letters)



>mm_chr3_72691777_72692344
          Length = 568

 Score =  271 bits (140), Expect = 2e-77
 Identities = 160/168 (95%), Gaps = 4/168 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggactcctaaagggggacaacatttgaaatgtaaataaattaaatatcaaaaaaaaaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||   || ||||||||
Sbjct: 204 ggggactcctaaagggggataacatttgaaatgtaaataaattaaa---cataaaaaaaa 260

                                                                       
Query: 61  cttcaaaaaaatgagtctctacatccagattatttaagagaacactattttcttccctgg 120
           |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 261 cttc-aaaaaatgagtctctacatcctgattatttaagagaacactattttcttccctcg 319

                                                           
Query: 121 tgaagatgtgcaaccaaacaaagaaaatgatttttattaaacattgga 168
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaagatgtgcaaccaaacaaagaaaatgatttttattaaacattgga 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 568
Length adjustment: 8
Effective length of query: 161
Effective length of database: 560
Effective search space:    90160
Effective search space used:    90160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)