BAC Information

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BAC

Clone NameMSMg01-128G21
Chromosome3 (Build37)
Map Location 59,716,583 - 59,716,930
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803
Downstream geneC130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G21.T7 (MSMg01no128_g21.b1)MSMg01-128G21.TJ (MSMg01no128_g21.g1)
ACCAG336701AG336702
length715719
length of high quality
(start - end)
250 (67 - 316)345 (71 - 415)
definitionCHROMAT_FILE: MSMg01no128_g21.b1 PHD_FILE: MSMg01no128_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:31 2005CHROMAT_FILE: MSMg01no128_g21.g1 PHD_FILE: MSMg01no128_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCCTATGTGCATAGATGCGCGGAATTCAA
CAGGCTTACCAATAGAAGCAGGAGCTAATGCAGAGGCCACAGAGGGATGC
TGCTTATTGGCTTGTCCTCCCTGGCTTCCTCTGCCAGCTTTCTTATAAAA
CCTAGGACCACTAGCCCAGGGATTGAACCACCCACAATGGACACTCCCCA
TCTATCACTAATTAATAAAATTCTTTACAATGGAATATTATAGATGCATT
TTTTTAATTGAGGTTTTCTCCTTTCAGATAACTCTAGTTTGTGTGTCAAG
TTGATAAAGACTAGTTTTTTTTTGGGTCTACGAGTATTTAGGGGGTGCTG
GAAAGTTAATGGAGTATTATATTTCTTCAGTGATACAGACTTCTTAAACT
ATTGCTCATATTACGGTAGACTCCTCAGCTATGCACTTGCCTTTGAGTCA
CTCATGCTCACATAGATATCCTGACAGGAAGGAAAGTATTCCAACTGGAA
TCACAAGTGACATGATACCTAATGAAACTAAAAGTTGATAGATTTACTGT
CATTGAGTAAATTATGACATTGTAGCATTATATTTGTGTGTAAGCTCATG
ACATTGTTGCTTATAGTAGGTTCAAACTTCTGAGGAGTGTAGTCTGATTT
TGCACGTATAGCATGATAGCATTAGCACTGCCCTCTACTGTACTGAGCAT
TTTGTAAAGAAAGAA
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTTTATTTTTTTAATCATGTTTAGTGTC
TTTGACTTTACTGATTGTAATTCATCTTCTATAGGAGTCACATCTTCTTG
CTTTTAATATTTCTCAAGTTTCTGTGTTGATATAAAATTCTGTCAGGTTA
GATGTATCTTTGACTTATTGATGATCTTCTAAGTGAGCAAATTCTTGAGG
GATCAATTCTCAGTGCTACTCACAGAGGAAAAATCAAGCTGCTGTAACAG
ATATAACTTCCAGCCAAATAAGCTAGGCTTAATATTGAAGGAAAAAACAA
ACAAACAAACAAACAAAAAACCTGTTGCAGGCATTCCTCTGAAAAAAGTG
CCCTGACACTAATAGTGCGAAGAGAGGATATGTCAACAGTGGGCTGAAGC
AAGGATTGCACCTGAAAGGATTTGGTGTCAGATCCACTTGGTATTCCCAT
TATCTACTCTATACCATAAGGTGGTTTGAGCAACAAGTGAGACTTTACTT
AAGCTTGCTCTGCAGCCAGTTTTTTGTTTTTTAAAGGTACATGTTATAAT
GGGCATGACTGACCTTTCTTGATCATGTTGTTAACGGCAATGATCCATAG
TTTCAGTTAGTTTCCTAGACTTTTTCCTATGCAATACTGAAATGAGCATT
AAGTAATTTTAATTTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g21.g1 MSMg01no128_g21.g1 CHROMAT_FILE:
MSMg01no128_g21.g1 PHD_FILE: MSMg01no128_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:31 2005
         (345 letters)



>mm_chr3_59716383_59717118
          Length = 736

 Score =  555 bits (287), Expect = e-162
 Identities = 331/357 (92%), Gaps = 21/357 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctttatttttttaatcatgtttagtgtctttgactttactgattgtaattcatcttct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctctttatttttttaatcatgtttagtgtctttgactttactgattgtaatt-atcttct 259

                                                                       
Query: 61  ataggagtcacatcttcttgcttttaatatttctcaagtttctgtgttgatataaaattc 120
           |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ataggagtc-----ttcttgcttttaatatttctcaagtttctgtgttgatataaaattc 314

                                                                       
Query: 121 tgtcaggttagatgtatctttgacttattgatgatcttctaagtgagcaaattcttgagg 180
           ||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||
Sbjct: 315 tgtcaggttagatgtatctttcacttattgat---cttctaagtgagcaaattcttgagg 371

                                                                       
Query: 181 gatcaattctcagtgctactcacagaggaaaaatcaagctgctgtaacagatataacttc 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gatcaattctcagtgccactcacagaggaaaaatcaagctgctgtaacagatataacttc 431

                                                                       
Query: 241 cagccaaataagctaggcttaatattgaaggaaaaaacaaacaaacaaacaaacaaa--- 297
           || |||||||||| |||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 432 caaccaaataagccaggcttaatattgaaggaaaaaacaaacaaacaaacaaacaaacaa 491

                                                                    
Query: 298 ---------aaacctgttgcaggcattcctctgaaaaaagtgccctgacactaatag 345
                    |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 492 acaaacaaaaaacctgttgcaggcattcctctgaaaaaagtgccccgacactaatag 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 736
Length adjustment: 9
Effective length of query: 336
Effective length of database: 727
Effective search space:   244272
Effective search space used:   244272
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)