BAC Information

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BAC

Clone NameMSMg01-128H18
Chromosome3 (Build37)
Map Location 48,298,570 - 48,298,748
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128H18.T7 (MSMg01no128_h18.b1)MSMg01-128H18.TJ (MSMg01no128_h18.g1)
ACCAG336741AG336742
length748736
length of high quality
(start - end)
463 (45 - 507)183 (123 - 305)
definitionCHROMAT_FILE: MSMg01no128_h18.b1 PHD_FILE: MSMg01no128_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:35 2005CHROMAT_FILE: MSMg01no128_h18.g1 PHD_FILE: MSMg01no128_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATTCCCACCAAATGGCTGAGAAGCACCTGAAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATTCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATAAAAAAATTCAGGTGACAGGAGATG
CTGGCGAGGATGTAGAGAAAGAAGAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGCTTCCTCAGAAAA
TTTGACATAGCACTACCTGAGGATCCCACAATACCTCTCCTGGGCATATA
TCCAGAAGATGTTCCAACCAGTAAGAAGGACACATGCTCCACTATGTTCA
TAACAGCCTTATTTATAACAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAAAGTGGTACATTTACACAATGGAGTA
CTACTCATCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAGGAAC
TCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGA
ATACCCACGATATAAGATACAATTTGCTAAACATATGAAACTCAAGCATG
AAGAGCAAAGTGTGGACACTTTGCCCCCTCTTACAACTGGTAACAAAN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACAAGATAACAAATCCAAGTCCAAAAATCCACATTCTTTC
AATAAAAGATGGTCACCCCATCCACTAATACCCCACTCTGAGTACCAACT
TCTTCTCATCAAAAAATGGCCACAGTTAAACTCACTGTGTATGTTTTCCA
GCATTGGGCACGTTAATTAAATGAGAAAAAAATAATAATACAATTGTTTC
TTTAGTGTGAACTTTAATACTATAGGTAACAGCCATTGCTATTATAATAT
GCATTACATATACTGATAGATTATATTTCATTCTAATCAACTGATACATA
AATGCATCCTTGACTCATGGATATATCTCTTAATATTGTTAACTAGATTA
CATGACTATAATTAGCTTCATCAATATAACAAAGATGCTTGACTGAGGTG
GAATTTCAAGGTTCAAAGCTGATTCTGGAAATTCCTTTGTAGAGCTTTTC
CCATGGTGTGTTTGCCCTTTCTCTCAGCAATATTCCTCTGTGTGTTCAAA
CTGGCATATTTAAAGTCCAAAGGACATTGGCATAAAAAAATCTGTATACA
CCAATGAGGCTGCTGTGCGCCTTGTTCCTAAATAGATATGAACAAAGATT
ACTCTTTTTTAATAGGACACCAACCCGAGACTAATCTAACCTCATCAAAG
ACCAATTTGCTAAGAAATAAGTTTATTGGGATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_h18.g1 MSMg01no128_h18.g1 CHROMAT_FILE:
MSMg01no128_h18.g1 PHD_FILE: MSMg01no128_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:35 2005
         (183 letters)



>mm_chr3_48298370_48298952
          Length = 583

 Score =  339 bits (175), Expect = 9e-98
 Identities = 178/179 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactaataccccactctgagtaccaacttcttctcatcaaaaaatggccacagttaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cactaataccccactctgagtaccaacttcttctcatcaaaaaatggccacagttaaact 320

                                                                       
Query: 61  cactgtgtatgttttccagcattgggcacgttaattaaatgagaaaaaaataataataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cactgtgtatgttttccagcattgggcacgttaattaaatgagaaaaaaataataataca 260

                                                                      
Query: 121 attgtttctttagtgtgaactttaatactataggtaacagccattgctattataatatg 179
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attgtttcattagtgtgaactttaatactataggtaacagccattgctattataatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)