BAC Information

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BAC

Clone NameMSMg01-128M18
Chromosome3 (Build37)
Map Location 33,978,943 - 33,979,467
singlet/doubletsinglet
Overlap geneDnajc19
Upstream genePex2, EG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h
Downstream geneLOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128M18.T7 (MSMg01no128_m18.b1)MSMg01-128M18.TJ (MSMg01no128_m18.g1)
ACCAG336974AG336975
length717695
length of high quality
(start - end)
293 (122 - 414)522 (75 - 596)
definitionCHROMAT_FILE: MSMg01no128_m18.b1 PHD_FILE: MSMg01no128_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:00 2005CHROMAT_FILE: MSMg01no128_m18.g1 PHD_FILE: MSMg01no128_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CTTTGCTATTGCATGCATGTATTGGGCTACCTTACATCCATAGTTGATCT
GCATTTGTCAGGACTCCACCGAGAGAAATGCACCAAAAACTTCTGGTGGT
GTGCTGCAGTTTCTTGCTGACTTTGCAGACTCGGGCTGAGATAGACACTT
GTGCTGAGACAAGACATGTGCTGAGGCAAGGCTCACGGAGGACACATGAT
GTTCAGAGAGAGGATAAAAGGACTTAATGGGCAGTGATGGAGGCTGCGCT
TGGCTTGCTTATAGAGCTAGTTGTGCAATGATTCTGAGCCTGGAGTCTAT
GCTGATTTTCCCTTCCCTGACACAGGCACAGCCAAGAACTCCTGTGTTAC
TTCTGGTCCCCCCCGCTGACTTGTCTCTCGCTGTCTCTGCAGGCAGTCTC
ACTGCTGTTGCTAACCCAACTCTGTTGAACTGGACTGCTGGTGTATCCAT
GAAGTACTTGCTAGTGGATTGAGCTATTGCTGCTGCTAACCTGCGAACGG
AACTGTTGATTTCCAACAATACAGATGGGAGTTGCTCCCAAGAACCATCC
TACTTGTCTACTTCCTCCATATCCTTTCTTTCCCCCACCTCTGTTGGGCG
GTGGCCTAAAGGGGAGGTTAAAGCATTTTACAACCATGGTTAATAAACAC
GTTCTGGAAAAATTATC
CCCCAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACCTTACAGGCAAGCTCCAGGCTTCA
AACACAGGCAATTTAGTTAGCAAGAAGGTTCACTTACAGATTTTGGTAGG
CTCTGAAAAACTTGTTTTACTTGAGGCTCCACATGCTTCATGGCTTGTAA
AACATAACGGCCTAAAACCAAAAGCAACAGAATAAGCAAATCCATGCATA
ACCAGTCTGCTCCACCCCCAACCCACAGACAAACCTGCAAATCCTGCAGC
AGCAATGGTCAACCCGACTGCTACCACTGTGCTGGCCTGTAATGGAGAAG
AGCAAGTCTTTACTACTCTTAATTGCTACCTATTCCGCAGCCAAACTCAT
TACGACCTCCCCCCTGGTGAAAGGTGGGTTCTTTTTCCCTTTTGGGGCAG
GATTAGGGGTGGGACCTAGTGTGTGTCTCATGCTGGTAAGGTGCCTACAA
CTCCAGCCTTTCTCAAAGTTCCAACACTTTTATTCTGAGGTGGAGTCTTG
CTAAAATTGTCCAGGCTGCCCACGAATTTGCGACTAGCTCTCTAAGCAAC
TGGGACTTTACAGAGTGCAGCACAGGGTCTGCTGGAAGAAACATTTTTTT
TTTTCTAATAAAAATATGTCTTTAAAACTACTGCAGTTGGACGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_m18.g1 MSMg01no128_m18.g1 CHROMAT_FILE:
MSMg01no128_m18.g1 PHD_FILE: MSMg01no128_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:00 2005
         (522 letters)



>mm_chr3_33978743_33979667
          Length = 925

 Score =  930 bits (481), Expect = 0.0
 Identities = 513/529 (96%), Gaps = 11/529 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttacaggcaagctccaggcttcaaacacaggcaatttagttagcaagaaggttcact 60
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 201 accttacaggcaagctccaggcttcaaatacaggcaagttagttagcaagaaggttcact 260

                                                                       
Query: 61  tacagattttggtaggctctgaaaaacttgttttacttgaggctccacatgcttcatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagattttggtaggctctgaaaaacttgttttacttgaggctccacatgcttcatggc 320

                                                                       
Query: 121 ttgtaaaacataacggcctaaaaccaaaagcaacagaataagcaaatccatgcataacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaaaacataacggcctaaaaccaaaagcaacagaataagcaaatccatgcataacca 380

                                                                       
Query: 181 gtctgctccacccccaacccacagacaaacctgcaaatcctgcagcagcaatggtcaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgctccacccccaacccacagacaaacctgcaaatcctgcagcagcaatggtcaacc 440

                                                                       
Query: 241 cgactgctaccactgtgctggcctgtaatggag---aagagcaagtctttactactctta 297
           |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 441 cgactgctaccactgtgctggcctgtaatggaggagaagagcaagtctttactactctta 500

                                                                       
Query: 298 attgctacctattccgcagccaaactcattacgacctcccccc----tggtgaaaggtgg 353
           ||||||||||||||||||||||||||||||||||||| |        |||||||||||||
Sbjct: 501 attgctacctattccgcagccaaactcattacgaccttc----attttggtgaaaggtgg 556

                                                                       
Query: 354 gttctttttcccttttggggcaggattaggggtgggacctagtgtgtgtctcatgctggt 413
           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 557 gttctttttcccttttggggcaggattagggatggaacctagtgtgtgtctcatgctggt 616

                                                                       
Query: 414 aaggtgcctacaactccagcctttctcaaagttccaacacttttattctgaggtggagtc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaggtgcctacaactccagcctttctcaaagttccaacacttttattctgaggtggagtc 676

                                                            
Query: 474 ttgctaaaattgtccaggctgcccacgaatttgcgactagctctctaag 522
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttgctaaaattgtccaggctgcccacgaatttgcgactagctctctaag 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 925
Length adjustment: 10
Effective length of query: 512
Effective length of database: 915
Effective search space:   468480
Effective search space used:   468480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)