Query= MSMg01no128_o19.b1 MSMg01no128_o19.b1 CHROMAT_FILE:
MSMg01no128_o19.b1 PHD_FILE: MSMg01no128_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:10 2005
(469 letters)
>mm_chr3_117447223_117448091
Length = 869
Score = 866 bits (448), Expect = 0.0
Identities = 463/468 (98%)
Strand = Plus / Plus
Query: 1 gataacatttgaaatataaataaagaaaatatctaataaaaataaataatttttaaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gataacatttgaaatataaataaagaaaatatctaataaaaataaataatttttaaaaga 260
Query: 61 tgagaaataggatcctcatccaatgatttcagcagaagtgacggcatgtgacatttgagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgagaaataggatcctcatccaatgatttcagcagaagtgacggcatgtgacatctgagt 320
Query: 121 tccaatccccaaaccactgcccattatcatgcactttctaggtctttgagcatagccagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaatccccaaaccactgcccattatcatgcactttctaggtctttgagcatagccagc 380
Query: 181 atgctatgaggaagcccaagcatcatgtgccaagagccatctgaagaaattctgaggcca 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctatgaggaagcccaagcagcatgtgccaagagccatctgaagaaattctgaggcca 440
Query: 241 gaagcccacaactctggactctgagcttcagcctcattgaacaaaatatcacacacagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 441 gaagcccacaactctggactctgagcttcagcctcattgaacaaaatatcaaaaacagtg 500
Query: 301 gttccatatgatacaacctgaagaaaaaaaatgagctacctcttcccacatttcataatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttccatatgatacaacctgaagaaaaaaaatgagctacctcttcccacatttcataatt 560
Query: 361 ttgaacaaaataaatgtttggttttttagactccatgacatacataatttgttaaggagc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ttgaacaaaataaatgtttggttttttagactccatgacatacataatttgttaagaagc 620
Query: 421 aatgaacatctatgctatcacttgatacctataaacgatcctgtctga 468
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgaacatctatgctatcacttgatacctataaacgatcctgtctga 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_o19.g1 MSMg01no128_o19.g1 CHROMAT_FILE:
MSMg01no128_o19.g1 PHD_FILE: MSMg01no128_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:10 2005
(292 letters)
>mm_chr3_117592503_117593194
Length = 692
Score = 462 bits (239), Expect = e-135
Identities = 289/331 (87%), Gaps = 40/331 (12%)
Strand = Plus / Minus
Query: 1 catgcttacaagagcaggttcagggacacctgttaagctacccaaagcgcaccattgcta 60
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 591 catgcttacaagagcaggttcagggacacc-gttaagctacccaaagcgcagtattgcta 533
Query: 61 a---------------------------------------ttatttcaaccgattcttgt 81
| ||||||||||||||||||||
Sbjct: 532 atgtcaaacaaaaacatcagtatttaatgaagcaaagaggttatttcaaccgattcttgt 473
Query: 82 aaagatatgacaggaaatgagggttatagcaataatgggaagagataacttgataggaag 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaagatatgacaggaaatgagggttatagcaataatgggaagagataacttgataggaag 413
Query: 142 aacattcactatgaaagatctgcggtatgtgaatttaagctttaaaataattagtattct 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aacattcactatgaaagatctgcggtatgtgaatttaagctttaaaataattagtattct 353
Query: 202 acatgagaaacggtctgcaggcagatttgttaatctggggcttaaaaagaaatctcaaag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acatgagaaacggtctgcaggcagatttgttaatctggggcttaaaaagaaatctcaaag 293
Query: 262 ttcagattagtatttgttggcttgtagaagt 292
|||||||||||||||||||||||||||||||
Sbjct: 292 ttcagattagtatttgttggcttgtagaagt 262
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
