BAC Information

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BAC

Clone NameMSMg01-128P09
Chromosome3 (Build37)
Map Location 17,162,657 - 17,163,184
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936
Downstream geneLOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128P09.T7 (MSMg01no128_p09.b1)MSMg01-128P09.TJ (MSMg01no128_p09.g1)
ACCAG337098AG337099
length717711
length of high quality
(start - end)
529 (67 - 595)586 (68 - 653)
definitionCHROMAT_FILE: MSMg01no128_p09.b1 PHD_FILE: MSMg01no128_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:13 2005CHROMAT_FILE: MSMg01no128_p09.g1 PHD_FILE: MSMg01no128_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAAAGTTCACAGCACTTGTTCCATGGATATATATATACTCAGAAAT
ATATGTACACATATATTTATCCCACACATATACACAACATGTTGTGAAGC
CAAAGAAAATAAAGGAATCTAAAGTAACAAAGATGTGTTGCTCTGATGAG
CAGAAATACAATTGACATAAACTGAATTTAGGTCCTTAAAATATATCAAT
CAAAATGTCACCAACATTAATGTGTGAGTTGTAAAATTATCTCATACCTT
AAATCATTTTGTACTAAAATAGTTACAAATAAATTATAAAGTAGATGAAT
ATACAAAACATGATATATATTACTATTCTAACCATCTAATCATTGCATCA
GTTCATTCATACTAACATAAACTCTTAGTAAGAAAGTTTGTGTGTAATAC
TTTCACATTGTGTAGGTTAAATTTTCTCCCTTGCCCTGCTGTGCTGTAAC
CTTTTATCTTGAACAAATGCTGCTTTTCTATATGGAAAAAAAATGCAGTT
ATCAATGCTACAGAATAATTGTCATGAATTAAAATATTCTTTTAAATCAT
ACAATTTAAATCCCCTCATATATCATATTAAATTATTGGTAAATAATATT
AAGGACTGGAATAAAGGTAATTATAATTTCCGATGAATTTCATGATAGGA
ATAAATTAACAATTGAC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTGAACCAATTTTTAATCAG
ATTATTTGGTTTTATCTAACCTTCTGTCAGATGATGCAGAAGTAATAAAG
ATCCTTTCCCAATATATAGGCTGAGTCTTCGTCCTATTCACAGTGGCCTT
TGCCTTATAGATGCTTTTCAATTTCTTGAGGTGGCATTTATCAATTTGTT
TTCTATTTGGGAAAACTGTCTCTTATACCAATGTGTTCAAGGTTATTTTC
CAATTTCTCTTCTATGAATTTTAGTGCACCCAGTTTTGTGTTGATATCTT
TGATTGACTTACACTTGAATTTTGTGCAAAATGATAAATCTATTTTTACT
TGTCTACATATAGACATCCAGTAAGACAGGCACCAATTGTTGAAAATGTT
TTCTTTTTTTCATTGTATGGTTTTGGCTTTTTTAAAAATATCAATTGACC
ATAGGTATATGGGTTTATTTCTGTGGCTTTGACTCAATTCCACTCATCAA
CATGACTTTTTCTGTATCAATACCATTAAATGTGTATCACGATTTGCTCT
GTAGTTCAGCTTGAGGTCAGGGATGGAGCTTTTCCCAATGTTTGTTTGTT
GTTCAGGATTACTTTGGCTATTCATGGGTTTTTTTTTCCCCGTATGAAGT
TGAGAACTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_p09.b1 MSMg01no128_p09.b1 CHROMAT_FILE:
MSMg01no128_p09.b1 PHD_FILE: MSMg01no128_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:13 2005
         (529 letters)



>mm_chr3_17162457_17163384
          Length = 928

 Score =  977 bits (505), Expect = 0.0
 Identities = 523/529 (98%), Gaps = 1/529 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttgttccatggatatatatatactcagaaatatatgtacacatatatttatcccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 201 cacttgttccatggatatatatatactcagaaatatatgtacacatatatttatatcaca 260

                                                                       
Query: 61  catatacacaacatgttgtgaagccaaagaaaataaaggaatctaaagtaacaaagatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatacacaacatgttgtgaagccaaagaaaataaaggaatctaaagtaacaaagatgt 320

                                                                       
Query: 121 gttgctctgatgagcagaaatacaattgacataaactgaatttaggtccttaaaatatat 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gttgctctgatgagcagaaatacaattgacattaactgaatttaggtccttaaaatatat 380

                                                                       
Query: 181 caatcaaaatgtcaccaacattaatgtgtgagttgtaaaattatctcataccttaaatca 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatcaaaatgttaccaacattaatgtgtgagttgtaaaattatctcataccttaaatca 440

                                                                       
Query: 241 ttttgtactaaaatagttacaaataaattataaagtagatgaatatacaaaacatgatat 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ttttgtactaaaatagttacaaataaattataaggtagatgaatatacaaaacatgatat 500

                                                                       
Query: 301 atattactattctaaccatctaatcattgcatcagttcattcatactaacataaactctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atattactattctaaccatctaatcattgcatcagttcattcatactaacataaactctt 560

                                                                       
Query: 361 agtaagaaagtttgtgtgtaatactttcacattgtgtaggttaaattttctcccttgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaagaaagtttgtgtgtaatactttcacattgtgtaggttaaattttctcccttgccc 620

                                                                       
Query: 421 tgctgtgctgtaaccttttatcttgaacaaatgctgcttttctatatggaaaaaaaatgc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 tgctgtgctgtaaccttttatcttgaacaaatgctgcttttctatatggaaaaaaa-tgc 679

                                                            
Query: 481 agttatcaatgctacagaataattgtcatgaattaaaatattcttttaa 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agttatcaatgctacagaataattgtcatgaattaaaatattcttttaa 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space:   476442
Effective search space used:   476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)