BAC Information

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BAC

Clone NameMSMg01-129L04
Chromosome3 (Build37)
Map Location 64,753,438 - 64,753,726
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129L04.T7 (MSMg01no129_l04.b1)MSMg01-129L04.TJ (MSMg01no129_l04.g1)
ACCAG337641AG337642
length657689
length of high quality
(start - end)
294 (98 - 391)288 (83 - 370)
definitionCHROMAT_FILE: MSMg01no129_l04.b1 PHD_FILE: MSMg01no129_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:12 2005CHROMAT_FILE: MSMg01no129_l04.g1 PHD_FILE: MSMg01no129_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAGATCCGCGGAATTCTCACCTGATTCCTACAGAATGGCTGAAAAGC
ACCTGAAAAAATGCTCAGCATCCTTAATCATCTTATACCCGCAAATCAAA
ACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAC
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGTATACTCT
TTCATTGTTGGTGGGTTTGCAAGCTTGTACAACCACTCTGGAAATCAATC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGTTAT
ACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACA
CATGCTCTACTATGTTCATAGCAGCCGTATTTATAATAGCCAGAAGCTGG
AATAACACCAGATGCCCCTCAACAGAGGAATGGATACGAACAATGTGGTA
TATTTACACAATGTAGTACCACTCAGTTATTAAAAAATGAATTTATGATA
TTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
ACAATCACTATAGAACTCAAATGCTATGTACTCACTGATAAGTAGATATT
AGCCCAAAAACTTAGTATACCCGAGATATGACAGACCATTTGCAAAACAC
CTGTAAT
TTTTTAATTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGATATTTTTTATTC
CCTAGAGGAAAAAAAAATGACTCTCATCCACCAAGCTCATTACTGGCTTT
CCAAAGGATATTTTCCGAGTCTCAATTCAGAGAGCTTTGTTTACCATTGC
ACCAAGTTCCTGCCTTTTGTTGTGCAGGTTCTGAAGCGCCCAGTGAGGCT
GTGAGGGCTGCTACTACGATTTCACCACCAGGAAAGGAACGCAAGGCACC
TGCTCTCCAGATCCCGTCCGCCCGGATGATGTCCCCATCGCTGCGTGCTC
ACCTGTGCGGCATCCCGGTGTTGTGTGCCGTGCCGTGCTCGCTGGACAGC
TCGCAGAGCTTTAGGTACCAGTTCATCTCCACCTCCCGCAGCAGGGTCAG
CTGCCTTGCCCTGAGCTGAGTTTGCCCGGTTGGGCTGAGGCTGCTGCCTT
TGGCATTCTCGGTGGCTTTCCTGGGAGATCTGTCTTTCCTCCCCTGAAGA
AAGGCCAGACTGCTTTCTGAACTTGCTGTTGTCTTCCGAGATCTGACTCC
CCTGCCGTGTCCGTGCGTTCTGCCAGCTTCCTGGAATCCTCCTACTTGCC
TGTCTGGTACGAGGCTCTTTGTCTGGTCTTAAATTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_l04.g1 MSMg01no129_l04.g1 CHROMAT_FILE:
MSMg01no129_l04.g1 PHD_FILE: MSMg01no129_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:12 2005
         (288 letters)



>mm_chr3_64753238_64753926
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagatattttttattccctagaggaaaaaaaaa-tgactctcatccaccaagctcatt 59
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 489 ctaagatattttttattccctagaggaaaaaaaaattgactctcatccactaagctcatt 430

                                                                       
Query: 60  actggctttccaaaggatattttccgagtctcaattcagagagctttgtttaccattgca 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 429 actggctttccaaaggatattttccgagtctcaattcagagagctttgtttatcattgca 370

                                                                       
Query: 120 ccaagttcctgccttttgttgtgcaggttctgaagcgcccagtgaggctgtgagggctgc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccaagttcctgccttttgttgtgcaggttctgaagcgcccagtgaggctgtgagggctgc 310

                                                                       
Query: 180 tactacgatttcaccaccaggaaaggaacgcaaggcacctgctctccagatcccgtccgc 239
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tactacgatttcactgccaggaaaggaacgcaaggcacctgctctccagatcccgtccgc 250

                                                            
Query: 240 ccggatgatgtccccatcgctgcgtgctcacctgtgcggcatcccggtg 288
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccggatgatgtccccatcgctgcgtgctcacctgtgcggcatcccggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 689
Length adjustment: 9
Effective length of query: 279
Effective length of database: 680
Effective search space:   189720
Effective search space used:   189720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)