BAC Information

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BAC

Clone NameMSMg01-130F02
Chromosome3 (Build37)
Map Location 51,743,285 - 51,743,644
singlet/doubletsinglet
Overlap genenone
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130F02.T7 (MSMg01no130_f02.b1)MSMg01-130F02.TJ (MSMg01no130_f02.g1)
ACCAG338103AG338104
length783707
length of high quality
(start - end)
105 (69 - 173)469 (75 - 543)
definitionCHROMAT_FILE: MSMg01no130_f02.b1 PHD_FILE: MSMg01no130_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:03 2005CHROMAT_FILE: MSMg01no130_f02.g1 PHD_FILE: MSMg01no130_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCACACGGATCCGCGGAA
TTCCCATTTTGCCTATTGTCAAGATCAGGGTAAACCACCTCGAAGGCAGA
AAAGCAGGCCTAGAACCTCCCCAAAAGTCCCAGATGTGTGTGTGTGGGGT
GTGTGTGTGTGTGTGTGTGTGTGTACTTCCCCCCCCTTTTTCCCCCTCCC
TTCCCCTTTCCCCCCTCTCCTCTCCCTTCCCTCCCACCCCCCCCTCCTTC
TCCCTTTTTCCTTCCTTTCCCCCTCTTCCTCCCTTTTCCCCCCTCTCCCT
TTTCCCCCTTTTCCCCCCCCCCCTCTCTTTCTTTTCCTTTTCCTTCCCCC
CCCTTCCCCTTTCTTTCCTTTCCCCCCCCCCCCCCCCCCCCTCCCTTTCC
CCCCTCCCCCCCTCTTTCCCCCTCCCTTCCCCCCCCCCCCCCCTCCTTCC
CCCCTTTTTTCTCCCCCCCCCTCTCCTCCCCCTCTTCCCCTTTCCCCCTC
CTTTTCCCCCCCTCTTTTTCCCCCCCCCCTTTCCCCCCCCCTCTTCCTTT
CCCTCTCTCCCTCTCTTTTCCCCTTCTCTTCTCACTTCTCCCTCCCCCCC
CCCCTCCCTTTTCCCCCTCCTTTTTCCTTTCCCCCCTTCTCCTTCTTTTT
TTCCCTTCCCTCCACCCTCTCCCCCAATCTTTTCTTCTTCCCCCCTTTTT
TTTCTTCCCCCTCCCCCCCCCCCTTTTCCCCCCCCCCCCCCCCCTTTTTT
CCCCCCCTTTTCCCCCCCCTCTCTTTTTTTTTA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATGCTTATAAAGGCCCGTGACAA
AGAACGCTGAAAGAAGATTGTGTGTGTTCGGGTTTTTTTGTTTTGTTTTG
TCTTGTTTTTCAAGTATAGTGTTCTGATGCAAAGGTGTCAGGAAACAAAA
GGGAGTCGGGAGTAAAAAGGAGAGGGACTGGTCCAGGTTTCAGTATTTTA
ATACTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCCC
TCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCACACACACACATACACACACACACACACACCTGATGGGTTTAGCAT
TTTCATTTTCTGGCACCCTCTGGAAGGTCTGGAATTGAGAGGAGGACATG
AGTCTTCTCCCCTCTACACTCATAGAGCATTTTTATCTCCCGGTGTATTC
AGGGTCCTTGTTTATCATGGCCTGAGCTGCCAACCTCTGGGATGTCACAG
GAGACTTCTTATTGACCTGCATATCAGCCTCACTTATTAATTCAGGCCTC
CTCACCCTCTCTGTGAGCAGCCAGCTGCTTTCTACTTCTTTCTCCCTCTG
CCTTGTTCTCCCTCGCCTCCACTCCACTTCTTACCTGGTTTCTTCATCCA
TCTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_f02.g1 MSMg01no130_f02.g1 CHROMAT_FILE:
MSMg01no130_f02.g1 PHD_FILE: MSMg01no130_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:03 2005
         (469 letters)



>mm_chr3_51742775_51743644
          Length = 870

 Score =  456 bits (236), Expect = e-132
 Identities = 343/414 (82%), Gaps = 55/414 (13%)
 Strand = Plus / Minus

                                                                       
Query: 56  gggtttttttgttttgttttgtcttgtttttcaagtatagtgttctgatgcaaaggtgtc 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gggtttttttgttttgttttgtcttgtttttcaagtatagtgttctgatgcaaaggtgtc 811

                                                                       
Query: 116 aggaaacaaaagggagtcgggagtaaaaaggagagggactggtccaggtttcagtatttt 175
           || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 810 agaaaacaaaagggagtcgggagtaaaaaggagagggactggtccaggtttcagcatttt 751

                                                                       
Query: 176 aatactctgtctctgtctctgtctctgtctctgtctctgtctctctctccctccctccct 235
           ||||||||||||||||||||||||||||||||                            
Sbjct: 750 aatactctgtctctgtctctgtctctgtctct---------------------------- 719

                                                                       
Query: 236 ctctctctctctctctctctctctctctctctctctctctctctcacacacacacataca 295
                                     ||||||||||||||| | |||||||||||| |||
Sbjct: 718 --------------------------ctctctctctctctcacacacacacacacacaca 685

                                                                       
Query: 296 cacacacacacacacctgatgggtttagcattttcattttctggcaccctctggaaggtc 355
           |||||||||||||||||||||||  |||||||||||||||||||||   |||||||||||
Sbjct: 684 cacacacacacacacctgatgggcctagcattttcattttctggcaggttctggaaggtc 625

                                                                       
Query: 356 tggaattgagaggaggacatgagtcttctcccc-tctacactcatagagcatttttatct 414
           |||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||
Sbjct: 624 tggaattgagaggaggacgtgagtcttccccccctctacactcacagagcatttttatct 565

                                                                 
Query: 415 cccggtgtattcagggtccttgtttatcatggcctgagctgccaacctctggga 468
           |||||||||||||||| ||||||||||||||  |||||||||||||||||||||
Sbjct: 564 cccggtgtattcagggcccttgtttatcatgatctgagctgccaacctctggga 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)