BAC Information

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BAC

Clone NameMSMg01-130F16
Chromosome3 (Build37)
Map Location 103,344,786 - 103,345,075
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
Downstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634, LOC668622, Lrig2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130F16.T7 (MSMg01no130_f16.b1)MSMg01-130F16.TJ (MSMg01no130_f16.g1)
ACCAG338129AG338130
length726724
length of high quality
(start - end)
246 (67 - 312)290 (68 - 357)
definitionCHROMAT_FILE: MSMg01no130_f16.b1 PHD_FILE: MSMg01no130_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:06 2005CHROMAT_FILE: MSMg01no130_f16.g1 PHD_FILE: MSMg01no130_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCAG
CGGCTCTCCGTGAAGTGATTAAAAAAAAAAAGTGCCTGAGCCACTGGTGT
TCTGTTCATGAAGTTGCCTCCCGTACCAATGTACAAAGCCCTTTCTCACT
TTCTCGTCTATTAGGTTTAGTGTATCTGGTTTTATGCTGAGACCCGGGAT
CCACTTGGACTTGAGTTGTGTGCATTTTTCTCCATGCAGACATCCAGTTA
AACCAACACTATTTGTTGAAGATGCTTTCTTTTTTCCGTTGTATGGTTTT
GGCCTCTTTATCTTTTTTCAAGTGTCCTAATAGGCGTATAGGTTTACTTC
TGTTNCTTCTATCCGATCTATCCATCAACATGTCTGTTTCTCTTACAAAT
ACCATACAGCCCTTATAAAAAATGCTCTGTAGCACAGCTTGAGGTTAGGG
ATGGTGAGTCTTTTATTGTTCAGGATTGTTTTGGCTATTGACTAGAAATC
TGCAACTGACAGGTGTGGAGAGGTAGGGGACATCTTCAGAGTGTCACAGA
TACCGGCGATGGGGATGAGGTAGGCAGCCAAGAATCAATGGGGGGGGGAC
CTTGGCTGTCACTCACAGTATTGCGGATATGGAACCTGAAGAGGCCTTCT
CCTTTAGCCAGGCCGGAACCCTATTGGAGCGATGGGACACTAATTTACCC
CCAAAACTTGAAATCCCATATTTATN
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGTGTGGAGCCCCAGATGGTCTGTGTCAGAAC
GGGAGTGGAGGGCACCCCTGAAACAACTTCTTACACACCACTGCCTTTGG
TAACCCCTGGGGCCCATGTCACCATCAGTTGTATGTGAGTGTTGCACATA
ATTTGTTACTAATAATACAGTGCCCGATTGAAAGGATTATTTACTTCTTG
AATAGAGCAACTACAATAGCCTAGCTCGCACATTTGCATAACAATCAGCT
CCCTGATCAGACCTTATAGCGTTCCCTCCAGCCTTTGCAAACAGCCCACA
CCAGAGCTTGTGCGTTTGCTTTTAGTTCTGGTTTGGGGGACAAGGTCTCT
TGTAGCTCACGCTATCCTCAAACTCTCTTGCTGTTGCTTCCCAAATCCTG
GGATTTCAAGTATGAGCCACGGCTCACGTTGAGTCACAGTTGGCTTTGTT
TACGTTTTAAGCGTTATTTTTACTGTTACCTATGTGTACATGGTTTTGCT
ATGTTATATGTATGCCACATGTGTGTGGGTGCCTGCATAGGCCAGTATAG
GGTATCAGACTACCTTGGAGCTGTTCCTGGTCGCTATGAGCAGCTTGATG
CTGGCGCCACGAACCAAACTCGGCCGCTCCGGTAGAGCACCAAACACTCC
CAACTGGTAAGTCACCTCCCAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_f16.g1 MSMg01no130_f16.g1 CHROMAT_FILE:
MSMg01no130_f16.g1 PHD_FILE: MSMg01no130_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:06 2005
         (290 letters)



>mm_chr3_103344586_103345275
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgtggagccccagatggtctgtgtcagaacgggagtggagggcacccctgaaacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgtggagccccagatggtctgtgtcagaacgggagtggagggcacccctgaaacaac 260

                                                                       
Query: 61  ttcttacacaccactgcctttggtaacccctggggcccatgtcaccatcagttgtatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttacacaccactgcctttggtaacccctggggcccatgtcaccatcagttgtatgtg 320

                                                                       
Query: 121 agtgttgcacataatttgttactaataatacagtgcccgattgaaaggattatttacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgttgcacataatttgttactaataatacagtgcccgattgaaaggattatttacttc 380

                                                                       
Query: 181 ttgaatagagcaactacaatagcctagctcgcacatttgcataacaatcagctccctgat 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ttgaatagagcaactacaatagcctagctcacacatttgcataacaatcagctccctgat 440

                                                             
Query: 241 cagaccttatagcgttccctccagcctttgcaaacagcccacaccagagc 290
           ||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaccagaaagcgttccctccagcctttgcaaacagcccacaccagagc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)