BAC Information

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BAC

Clone NameMSMg01-130G13
Chromosome3 (Build37)
Map Location 109,652,560 - 109,652,751
singlet/doubletsinglet
Overlap geneNtng1
Upstream geneFndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130G13.T7 (MSMg01no130_g13.b1)MSMg01-130G13.TJ (MSMg01no130_g13.g1)
ACCAG338169AG338170
length713713
length of high quality
(start - end)
300 (70 - 369)192 (126 - 317)
definitionCHROMAT_FILE: MSMg01no130_g13.b1 PHD_FILE: MSMg01no130_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:11 2005CHROMAT_FILE: MSMg01no130_g13.g1 PHD_FILE: MSMg01no130_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAGAGGGCGGAA
TTCTCCCCTGTGCCTACAGAATGGCAGAGAAGCACCTGAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCCAATCAAAACAACACTGAGATTCCA
CTTCACTCCAGTCAGAATGGCAAAGGTCAAAAACTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGAT
TGCAAGCTTGTACAACCACTCCTGAAATCAGTCTGGCGGTTCCTCAGACA
ATTAGACATAGTACTCCCGTATGATCCCGCAATACCTCTCCTGGGCATAT
ATCCAGAACATGCCCCAACTGGTACGAAGAACACATGCTCCATTATGTTC
ATAGCAGCCTTGTCCCTAATAGTCAGAAGCTGGAAAGAACCCAGATGCCC
CTTAACAGAGGAATGGATACAGAAAATGTGCTACATTTACACAATGGAAT
ACTACTCACCTATTAAAACAATGAATTTATGAAATTCCTAGGCAAATGGA
TGGACCTGGAGGGTATCATCCTGACCGAAGTAACCCAATCACAAAGGAAC
TCACACAATACGCACTCACTGATAAGTGGATATTAGCCTAGAAACTTAGG
ATATCCAAGATATGATACAACTTGCCAAATGCTTGATTTTCACCAACAAC
GATTACCACTGCG
CATGAAACTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCCGAAAATCGCAGTACACACAACAGGCACCGTATAAGG
CCACAAAGAAGGATTTTGCTCATGCCATTAAACACACCTGGAACATACCA
TCATAGTCGATGATGTTATAGTTTGACTATTTACCTTAAAAACCAGGCAA
CAGGCAAGCTAGTCCTTTGTGATACTGGGTGAGCACAGAATCCTCTTTCA
TCTTACTGATTAGAAAAAAACAAAATCAAAACCATACCAAAATAAAAAAA
TCCCAAACACCCATTGTGCTTTAAGATGAATAGTCAGGGGTATTCAGACT
ATACAATATATTTTTCGACTCCACACCTTTCCCCTCCCCCCATAGATATT
AGTGTAAAAACTCTCCCATATTCCTGATAATTAAGATTAGTACATTTTCC
AAGGGCACAACTCAGCATCCTTTCAGGTCACCACTGATTTCAAAAGGTAA
CTGTGCAAAATAAAACTGGAATTTCCTGATTCAATGCATAAAAGGTCAAT
ATCTTGCTGATGCTCATATATGGCGGATGGTGCGTAGTCGCCCACATGAC
ATGTGTAGCGAGCATACATTGTTACAGGTCCATGCAATACACATCTGCCT
CTCAGAGCAGAAACTCATGCCACGTATAACGAGCTACTTTCCCATTCATC
CATTCTCTGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_g13.g1 MSMg01no130_g13.g1 CHROMAT_FILE:
MSMg01no130_g13.g1 PHD_FILE: MSMg01no130_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:11 2005
         (192 letters)



>mm_chr3_109652360_109652951
          Length = 592

 Score =  356 bits (184), Expect = e-103
 Identities = 190/192 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattaaacacacctggaacataccatcatagtcgatgatgttatagtttgactatttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattaaacacacctggaacataccatcatagtcgatgatgttatagtttgactatttacc 260

                                                                       
Query: 61  ttaaaaaccaggcaacaggcaagctagtcctttgtgatactgggtgagcacagaatcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaaaaccaggcaacaggcaagctagtcctttgtgatactgggtgagcacagaatcctc 320

                                                                       
Query: 121 tttcatcttactgattagaaaaaaacaaaatcaaaaccataccaaaataaaaaaatccca 180
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 321 tttcatcttactgattagaaaaaaacaaaaccaaaaccaaaccaaaataaaaaaatccca 380

                       
Query: 181 aacacccattgt 192
           ||||||||||||
Sbjct: 381 aacacccattgt 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)