BAC Information

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BAC

Clone NameMSMg01-130P09
Chromosome3 (Build37)
Map Location 133,541,855 - 133,542,168
singlet/doubletsinglet
Overlap geneLOC100039168
Upstream geneNpnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130P09.T7 (MSMg01no130_p09.b1)MSMg01-130P09.TJ (MSMg01no130_p09.g1)
ACCAG338585AG338586
length1,414697
length of high quality
(start - end)
---319 (374 - 692)
definitionCHROMAT_FILE: MSMg01no130_p09.b1 PHD_FILE: MSMg01no130_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:01 2005CHROMAT_FILE: MSMg01no130_p09.g1 PHD_FILE: MSMg01no130_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCAAAATGTNNNNNNAGGCAATGCGGCGCTAAGGAATCACAATAGGG
AAGAGGGATCGGGGGAATTTCTTACCCCAGGGGAAAACCCATTTAGAGAG
GGGGGAGNNNCTGGGCCAAAAGGGGGGGAAAAATTTTCCCCTTTTAAAGA
GGGGAAAGGGGGGACCCCAAAAAAANNCGGGGGGAGAGTGATTTTTCTCC
CCCCCCCCCGAAAGGGGGGGGGAAAAAAAAAAAAATTCCTGGGGAGGAAA
AAAAAGGAGGGGGGGGAAAAGGGGGAAAAAAAAGGAAGAAAAACTTCCCC
CCTGGGGGGGGGGGGGGAATAAAAAATTTTTTAAAACCCACCCCGGGGGA
AAAAACCCCGGGGGGGGGTGCCCCCCCACAAAAAAGGGGGGGGAGAAANA
AAAAGGGGGGGGGGGGGTGTTTAAAAACTCCCCCGGGGGGGGGGTATTTT
AAAAGAAAAGAGGGCCCCCCCCCCCCAAAAGAAGGAGAAAAGACCCCCCC
CCCAGGGGTTTTTTTTTTCCCCCCCCTTTTTTTAAAAACACCCCGGGGGT
GGGGGGGAGGAAGAGAAAAAAGCCCCTTTTTTTTTTTTCCCCCCCCCCCC
CCCATAAAAAAAGGGGGGGGGGGTTGCTCTAAAAAAAAAGGGGGGGGGGG
GGGTCTCCCTCTCTCTCTATATAAAAAAAAAAAGGAAGAAATGTTTTTTC
TCCCTTCCCAAACTCTCCGGGGGGGGGGGGGGTGGGGGGGGGTCTTATTT
ATCTCTGAGGTGGGTGGTGGTTAAATACATATACCAACCATAAAAAAAAA
AAAAAATTATGTAGATTTTGTTTGTTTAAATAGTGAGTATAGGTTAATAG
TATATTCACTATATAATCAAAACAAATATAAAAGGTTTGAATATAGTAGG
TAGTTATTTATTATATTATTCCTAACTTGACTACTAGAATGAACAGAAGC
AAGAGAAAAATATGGAGGTGGGTTGGGGTGGCCGTGGCCGGCTCCCCCAC
ATACCTCTATACCCTTATTGATAAAGATACAATTATCATAATACCAGTCT
AGTTTAGAATAAGTAGTTAAAATTTTTTTATTATGTTTTTATTTGATATG
GGTAGACGTGTCAAGGGTTTTGCCAAATAGAATTTAGTAAATGTTTCTCC
AATATATTTACTTCTGTTATTAATTATTATACTATATTCCTTGCTCTAAT
CTTAACAAAACACATAAAATCATGAATGAATGGTTCTTAAATAATTTAAA
TACATGAATATTATAAATAAATAAATAATGAAAGAGTTAAGACCCTTATG
TAAGATTGTTTTCATACGAGTCTTCGATATAATTTAGTGGATGACTATCA
AAGTTCTCCTGAAATACTATTCAAGACATAATTTAGGGTAATACGATTAT
AGTCATATACTGAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGCAAAGTCTTAGCTGGGAGCAGGGTA
GATATGAACTGGTTTACAATAATTATCAGATTAGGATGCCTTTTAGACAG
TCCATTCATTCCTACAATGGAGCAATGTGCCTCTGGAGCAGAAGTCACTG
GAGTTCAAGGTTGCCTATCCCTCTGCAGGAGGCTGCGGCAACTCAACATG
GAAAGGGCTTGCTCTCACAGCAAGGTTTCAGCAGAGCCAAATGGGCTCTG
CCCTTAGAGTTCTGACCTCACCATTTAGGAACAGTGAAAGGAAGCAGCTT
CCATATTACCTTTCACCACTTGTGTGTAGATTTTAATTCTACCCACCGAG
TTTACTGCTAAATATGAAAGCAACCTTAAAAGAGAGTATTTTTTTAAAAA
TTCGTTTATTCAAATACATCTCCTCAAAGTTCAAAGAGTGACAATCTGCA
TTTAATTTAAAAACAAACAAACACAATTTGCAAAGTTTAAATGAAGCCCA
TTGCTTGAAGCTGTACTGGTTCTTTGCTTATCGACTGGATGGCTCAGTCA
GTCTTCATGGCATCAGGAAGCCAGCATGTTGGGCATCTATCCTAGGCTCT
GCTGAATGGATGGTTAGGGTAATCCTTCAAAAGCTCAGTTTAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_p09.g1 MSMg01no130_p09.g1 CHROMAT_FILE:
MSMg01no130_p09.g1 PHD_FILE: MSMg01no130_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:01 2005
         (319 letters)



>mm_chr3_133541655_133542368
          Length = 714

 Score =  565 bits (292), Expect = e-165
 Identities = 311/320 (97%), Gaps = 7/320 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtagattttaattctacccaccgagtttactgctaaatatgaaagcaaccttaaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtagattttaattctacccaccgagtttactgctaaatatgaaagcaaccttaaaaga 260

                                                                       
Query: 61  gagtatttttttaaaaattcgtttattcaaatacatctcctcaaagttcaaagagtgaca 120
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||     |
Sbjct: 261 gagtatttttttaaaattttgtttattcaaatacatctcctcaaagttcaaaga-----a 315

                                                                       
Query: 121 atctgcatttaatttaaaaacaaacaaacacaatttgcaaagtttaaatgaagcccattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 atctgcatttaatttaaaaacaaacaaacacaatttgcaaagtttaaatgaagcccattg 375

                                                                       
Query: 181 cttgaagctgtactggttctttgcttatcgactggatggctcagtcagtcttcatggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttgaagctgtactggttctttgcttatcgactggatggctcagtcagtcttcatggcat 435

                                                                       
Query: 241 caggaagccagcatgttgggcatctatcctaggctctgctg-aatggatggttagggtaa 299
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 436 caggaagccagcatgttgggcatctatcctaggctctg-tggaatggatggttagggtaa 494

                               
Query: 300 tccttcaaaagctcagttta 319
           ||||||||||||||||||||
Sbjct: 495 tccttcaaaagctcagttta 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 714
Length adjustment: 9
Effective length of query: 310
Effective length of database: 705
Effective search space:   218550
Effective search space used:   218550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)