Query= MSMg01no132_a10.b1 MSMg01no132_a10.b1 CHROMAT_FILE:
MSMg01no132_a10.b1 PHD_FILE: MSMg01no132_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:25 2005
(653 letters)
>mm_chr3_82884577_82885628
Length = 1052
Score = 1154 bits (597), Expect = 0.0
Identities = 634/647 (97%), Gaps = 4/647 (0%)
Strand = Plus / Minus
Query: 9 acacacacacacacacacacacacacacacacacacacacacactaacacagaaatatac 68
||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1025 acaca-acacacacatacacacacacacacacacacacatacactaacacagaaatatac 967
Query: 69 actcacattcacacacaaacttacgaatg--cacacactcacacacgtgaacatatacac 126
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 966 actcacattcacacacaaacttacgaatgcacacacactcacacacgtgaacatatacac 907
Query: 127 aaacgcacactcacatatgaacacacaccatacacactcatactcacacacacactcaca 186
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 906 aaacgcacactcacatatgaacactcaccacacacactcattctcacacacacactcaca 847
Query: 187 tgcacatacacagtaatcctgcagaaaaatgaagcagaattaaggagttgttttggggtg 246
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct: 846 tgcacatacacagtaatcctggagaaaaatgaagcagaattaagaagttgttttgggttg 787
Query: 247 ttatatgcttggagtgagaagattctgattttaaaacgggtaaaacgtttgctttctgcc 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 786 ttatatgcttggagtgagaagattctgattttaaaacgggtaaaacgtttgctttctgtc 727
Query: 307 attccttcaactaagaaagagaattttaaagttctaatttttactaaattaagcccaaat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 attccttcaactaagaaagagaattttaaagttctaatttttactaaattaagcccaaat 667
Query: 367 aggcagttcttacaaatatctctatttggtacattaaaatcattagataaccaagttcca 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aggcagttcttacaaatatctctatttggtacattaaaatcattagataaccaagttcca 607
Query: 427 atatatcttgcaaaacagatttgtttattaatattacagaattgcaaaggaacttaaaac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 606 atatatcttgcaaaacagatttgtttattaatattacagaattgcaaaggaactt-aaac 548
Query: 487 acactgcttaatcacttgtctaaggacagctgtactgacgggcaattgacaaaatgtgtg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 acactgcttaatcacttgtctaaggacagctgtactgacgggcaattgacaaaatgtgtg 488
Query: 547 cattgaacgtgtatgggatttggtccatatacactgtgaagttatcaatataattactat 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cattgaacgtgtatgggatttggtccatatacactgtgaagttatcaatataattactat 428
Query: 607 ttccatcacctgagagatgttcttctagtgtatgttttttatatatg 653
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttccatcacctgagagatgttcttctagtgtatgttttttatatatg 381
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_a10.g1 MSMg01no132_a10.g1 CHROMAT_FILE:
MSMg01no132_a10.g1 PHD_FILE: MSMg01no132_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:26 2005
(621 letters)
>mm_chr3_82743356_82744376
Length = 1021
Score = 1178 bits (609), Expect = 0.0
Identities = 618/621 (99%)
Strand = Plus / Plus
Query: 1 actaattaaggctttatttatttttctaaaatgaaaggattatttttctttggtttctgc 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaatgaaggctttatttatttttctaaaatgaaaggattatttttctttggtttctgc 260
Query: 61 ttcttgttttatttagcctaatttccttactaaaattggtaatgggagctgcaagagtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttgttttatttagcctaatttccttactaaaattggtaatgggagctgcaagagtct 320
Query: 121 aggtattattgactgcttgttagctctttaaatacaaaatgtacaatgttttatggaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtattattgactgcttgttagctctttaaatacaaaatgtacaatgttttatggaagt 380
Query: 181 atattttatatatagtagaattcataatacaacgtatgtagtttaatagctatagaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattttatatatagtagaattcataatacaacgtatgtagtttaatagctatagaaaca 440
Query: 241 cagattaatacattgatactacagatagattaatactggaaaaatgtacttaatcataaa 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 cagattaatacattgatactacagatagattaatactgggaaaatgtacttaatcataaa 500
Query: 301 acattaacagattttgttgtgctgaactcaccttgagacctaaattaagggaaaataata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattaacagattttgttgtgctgaactcaccttgagacctaaattaagggaaaataata 560
Query: 361 ggtcactcttgccttatgaatatatgctttaaaatcataaattaaatttcccaatgtgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtcactcttgccttatgaatatatgctttaaaatcataaattaaatttcccaatgtgca 620
Query: 421 tagtgttcaacttgaatttacttaagaatgcagttgggctgaagagaagactcaacaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtgttcaacttgaatttacttaagaatgcagttgggctgaagagaagactcaacaggt 680
Query: 481 taaagtacatgccactaagcctaatgaccttagttcagtccacagaaccctgatggagga 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 taaagtacatgccactaagcctaatgaccttagttcagtccccagaaccctgatggagga 740
Query: 541 aggagagaaccaagtctcacaagctgtccttaacatttccacatgtgtaccatggcatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggagagaaccaagtctcacaagctgtccttaacatttccacatgtgtaccatggcatat 800
Query: 601 gaacacgtgccacacacatac 621
|||||||||||||||||||||
Sbjct: 801 gaacacgtgccacacacatac 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
