BAC Information

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BAC

Clone NameMSMg01-132A11
Chromosome3 (Build37)
Map Location 41,873,544 - 41,874,191
singlet/doubletsinglet
Overlap genenone
Upstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
Downstream geneLOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132A11.T7 (MSMg01no132_a11.b1)MSMg01-132A11.TJ (MSMg01no132_a11.g1)
ACCAG339376AG339377
length721723
length of high quality
(start - end)		648 (74 - 721)648 (76 - 723)
definitionCHROMAT_FILE: MSMg01no132_a11.b1 PHD_FILE: MSMg01no132_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:26 2005CHROMAT_FILE: MSMg01no132_a11.g1 PHD_FILE: MSMg01no132_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGCAGCGCGG
AATTCTGTTCTCTTCCCATAAACCATGTCCAGCTGATGCTGTGTTGTTGT
GAACCATGAGTCTTCTAATTAAATTTTGCAGCCTATAACATGATTTTTAC
ATGAATGATACTTTGTTTAAACTATTAGATGTCAGTATTTTACTCCAATA
TTATTATAAAATGTACATTGTCACTAAGTGAACTTTGATTTTAAAAATCA
AGTTAGCTTTAGTTCCATATTTTTTACAAATGAAAGCAGAATTGTATAAA
GAAAAAAAGGCTTATCTAAAATTGATAATATAGCAATAACATGTCCTGTT
ATTAAAATTTTAGTTCTGAAGTCTTTTACATAAAATGAACCAATGAGAAG
CACAAGTCAGGCCCCTTATTTCTCCACATTAACTATATAATACCTTTTGG
GTCTGACCCAAAGTTTACTGTGGGAGTAAGACAAACCCAGTGTCCAGAGA
ATAGATGTGCAAGTGCACAGGTCTAGCGGTTTATAAATGCAAGAGCTGCA
TCATCAATCAGACGAGCTTGTGCCGAATAGAATGTTAGTAGAAAAGCAAT
TGGTTTCCTGGCTCACCCCTGTTCTCAGTCACTCCAAGACTCCCACCCAC
TGCCAAAAGCAGAAAGCTTCACTGAATTCCGCTCATCTCCTTCCTTCGTC
CCCCTGGGTGTTACAGAACAG

CAATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAAACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACACTGAGATTTCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGGATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATTCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATATCCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCAAGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_a11.b1 MSMg01no132_a11.b1 CHROMAT_FILE:
MSMg01no132_a11.b1 PHD_FILE: MSMg01no132_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:26 2005
         (648 letters)



>mm_chr3_41873344_41874391
          Length = 1048

 Score = 1207 bits (624), Expect = 0.0
 Identities = 642/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtccagctgatgctgtgttgttgtgaaccatgagtcttctaattaaattttgcagcc 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 catgtccagcagatgctgtgttgttgtgaaccatgagtcttctaattaaattttgcagcc 789

                                                                       
Query: 61  tataacatgatttttacatgaatgatactttgtttaaactattagatgtcagtattttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tataacatgatttttacatgaatgatactttgtttaaactattagatgtcagtattttac 729

                                                                       
Query: 121 tccaatattattataaaatgtacattgtcactaagtgaactttgattttaaaaatcaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tccaatattattataaaatgtacattgtcactaagtgaactttgattttaaaaatcaagt 669

                                                                       
Query: 181 tagctttagttccatattttttacaaatgaaagcagaattgtataaagaaaaaaaggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tagctttagttccatattttttacaaatgaaagcagaattgtataaagaaaaaaaggctt 609

                                                                       
Query: 241 atctaaaattgataatatagcaataacatgtcctgttattaaaattttagttctgaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atctaaaattgataatatagcaataacatgtcctgttattaaaattttagttctgaagtc 549

                                                                       
Query: 301 ttttacataaaatgaaccaatgagaagcacaagtcaggccccttatttctccacattaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 ttttacataaaatgaaccaatgagaagcacaagtcaggccccttatttctccacactaac 489

                                                                       
Query: 361 tatataataccttttgggtctgacccaaagtttactgtgggagtaagacaaacccagtgt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 488 tatataataccttttgggtctgacccaaagtttactgtgagagtaagacaaacccagtgt 429

                                                                       
Query: 421 ccagagaatagatgtgcaagtgcacaggtctagcggtttataaatgcaagagctgcatca 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 428 ccagagaatagatgtgcaagtgcacaggtctaacggtttataaatgcaagagctgcatca 369

                                                                       
Query: 481 tcaatcagacgagcttgtgccgaatagaatgttagtagaaaagcaattggtttcctggct 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcaatcagatgagcttgtgccgaatagaatgttagtagaaaagcaattggtttcctggct 309

                                                                       
Query: 541 cacccctgttctcagtcactccaagactcccacccactgccaaaagcagaaagcttcact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 308 cacccctgttctcagtcactccaagactcccacccactgccaaaagcagcaagcttcact 249

                                                           
Query: 601 gaattccgctcatctccttccttcgtccccctgggtgttacagaacag 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaattccgctcatctccttccttcgtccccctgggtgttacagaacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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