Query= MSMg01no132_i14.b1 MSMg01no132_i14.b1 CHROMAT_FILE:
MSMg01no132_i14.b1 PHD_FILE: MSMg01no132_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:04 2005
(683 letters)
>mm_chr3_80849083_80850165
Length = 1083
Score = 984 bits (509), Expect = 0.0
Identities = 533/541 (98%), Gaps = 1/541 (0%)
Strand = Plus / Minus
Query: 144 ttcttaaacaatgtgaacctcagcccccataatcaagtctaagtttaaaatacaagtcag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 ttcttaaacaatgtgaacctcagcccccataatcaagtctaagtttaaaatacaagtcag 1024
Query: 204 aagtaaatgctttgaattatccctgtttcccaaaatcaat-aaaaaagcacccactgata 262
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1023 aagtaaatgctttgaattatccctgtttcccaaaatcaataaaaaaagcacccactgata 964
Query: 263 agaaagttggcatttctagccagcctggtcttcataatgagttccaggaaagccagggat 322
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 agaaagttagcatttctagccagcctggtcttcataatgagttccaggaaagccagggat 904
Query: 323 gtgtagaataatgatgtctcataccacccccctcaaagaaagatgaatatttctttcatc 382
|||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 903 gtgtagaacaatgatgtctcatacccccccccccaaagaaagatgaatatttctttcatc 844
Query: 383 tcctctgttcatatcttgctcacatctcaagcaaatatccctcaatgcactgattgtaaa 442
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 843 tcctctgttcacatcttgctcacatctcaagcaaatatccctcaatgtgctgattgtaaa 784
Query: 443 caccctctgctcccatagaaagggaaattatggcactttaatgccttccccatttacatt 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 caccctctgctcccatagaaagggaaattatggcactttaatgccttccccatttacatt 724
Query: 503 tctaatcaccctagctatgagcgtgtgtggcagtatgggatataagctgtgatttatccc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tctaatcaccctagctatgagcgtgtgtggcagtatgggatataagctgtgatttatccc 664
Query: 563 tcagtagagaggaaagataaaagatacgactgttagaagacagatgtccttataaatagc 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcagtagagaggaaagataaaagatacgactgttagaagacagatgtccttataaatagc 604
Query: 623 cagtaaaaaagaacagccagaaacagcataagtgtcgtggaagtttaacttctgctgttg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 cagtaaaaaagaacagccagaaacagcataagtgtcgtggaagtttaacttctgctgttg 544
Query: 683 a 683
|
Sbjct: 543 a 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_i14.g1 MSMg01no132_i14.g1 CHROMAT_FILE:
MSMg01no132_i14.g1 PHD_FILE: MSMg01no132_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:04 2005
(611 letters)
>mm_chr3_80757163_80758173
Length = 1011
Score = 1015 bits (525), Expect = 0.0
Identities = 586/617 (94%), Gaps = 19/617 (3%)
Strand = Plus / Plus
Query: 1 tcactgttagctatttctctgctcatgcaaagttaataagcaggtacttccccaaggtac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tcactgttagctatttctctgctcatgcaaagttaataagcaggtacttccccaa----- 268
Query: 61 ttccccaaagctttgttcattacaatggtggttttacttcacttccaaggacagaccaac 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 269 --------agctttgttcattacaatggtggtttttcttcacttccaaggacagaccaac 320
Query: 121 ctacaataaaccttgaaacttttactcttctagacaacaaatttagcaatgaatatgaat 180
||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ctagaatataccttgaaacttttactcctctagacaacaaatttagcaatgaatatgaac 380
Query: 181 agagagaactgtgaagaagcctttgatagcatggggccttgagtgatatcattgttctca 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagaactgtgaagaaacctttgatagcatggggccttgagtgatatcattgttctca 440
Query: 241 ttttattctggttttgtgacaaacactgtcattaaaagcatttcacaggaggaaagtatt 300
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 441 ttttattctggttttgtgacaaacactgtcactaaaagcatttctcaggaggaaagtatt 500
Query: 301 tatttgacttatatttccaggtcacagtccattaccatgtgaaatcatggaagaaactta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttgacttatatttccaggtcacagtccattaccatgtgaaatcatggaagaaactta 560
Query: 361 ggcagaaacttgaagtggaaactttaccagaatgctgggttttgaactcacttgcagact 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 ggcagaaacttgaagtggaaactttaccaggatgctgggttttgaactcacttgcagact 620
Query: 421 catgcattttagctttcttatatag-----gaccacacacctgaggtgtgataccacttg 475
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 621 catgcattttagctttcttatatagcctaggaccacacgcctgaggtgtgataccacttg 680
Query: 476 -ataggtctggtatcctatataaatgaatattaagacaatccccatcaataatacccaca 534
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 cataggtctggtatcctatataaatgaatattaagacaatccccatcagtaatacccaca 740
Query: 535 gaccaatctaatcaggacaattgcttggttgagacttccttccaggctgtgttaacttga 594
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 gaccaatctaatcaggacaattgcttggttgagacttccttccaggctgcgttaacttga 800
Query: 595 cagttcaagttaacgag 611
|||||||||||||||||
Sbjct: 801 cagttcaagttaacgag 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
