BAC Information

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BAC

Clone NameMSMg01-132M23
Chromosome3 (Build37)
Map Location 52,508,811 - 52,509,111
singlet/doubletsinglet
Overlap genenone
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762
Downstream geneLOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132M23.T7 (MSMg01no132_m23.b1)MSMg01-132M23.TJ (MSMg01no132_m23.g1)
ACCAG339951AG339952
length705709
length of high quality
(start - end)
304 (77 - 380)636 (74 - 709)
definitionCHROMAT_FILE: MSMg01no132_m23.b1 PHD_FILE: MSMg01no132_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:26 2005CHROMAT_FILE: MSMg01no132_m23.g1 PHD_FILE: MSMg01no132_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATCCGC
GGAATTCAGGTTAAATCTCCTGTTTACATATATGATTGTGTACACATAAC
AATACTTGACAATACTTCACAAGGCAAAACTGGAAACCATATTTGCATTT
CTTCTCTGTCCTGAATGATGCTGATACCCACAAAAGTCCCTGTGTGATCT
ACATACATGCTTTAGGAAATGTTGCTCAACTCCAGTGTGTCTCATCTCTT
CAGGATTCCCACCTCCACAGAGTAAGTCACCTGAGACCCTTAAACATGGT
TGTCCTTTTGAAACACCCAATTCCTTGCCCCCTGGCTTGCTTCAGTCCTG
TGAGTAGCTTTGAGTCACGTCTCCTTCTATTAGATTTCTGCCCGAGTCAA
CTTTCATGAAATTACACTGTGACCACTAAATCTCAGGAAGACTTGCTCTT
TGAACTATAAACAAGTTGTAAGTGATGAGACAAAAGACCCTTTTTGCTAA
AGTCTAAGAAGAAAGCATTCCAGGACAAAACTGCAAGGTGAAGGGATAGA
TTACAGGGTAGGGTAGGACTGAGCAATGGACTGGTAGCTATTAGGATGTG
CCCTGGACTAGTAGCACTAAATATAAGTTGGAACAGGGGAAGCTGAGGTG
ACCCTGTCTGATGAACTATGATTCTTTCCTATGCTAGATCTATACATTCT
CCTGT
NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTTAGAAAATTGGACATAGTACTACCAGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAATCGGTAAGACG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGACGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTAGCCCAAAACTTAGGATACCCAAAATATAAGATACAATTTGCTA
AAGGCATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_m23.b1 MSMg01no132_m23.b1 CHROMAT_FILE:
MSMg01no132_m23.b1 PHD_FILE: MSMg01no132_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:26 2005
         (304 letters)



>mm_chr3_52508610_52509313
          Length = 704

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   atatatgattgtgtacacataacaatacttgacaatacttcacaaggcaaaactggaaac 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atatatgattgtgtacacataacaatacttgacaatacttcacaaggcaaaactggaaac 261

                                                                       
Query: 62  catatttgcatttcttctctgtcctgaatgatgctgatacccacaaaagtccctgtgtga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catatttgcatttcttctctgtcctgaatgatgctgatacccacaaaagtccctgtgtga 321

                                                                       
Query: 122 tctacatacatgctttaggaaatgttgctcaactccagtgtgtctcatctcttcaggatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctacatacatgctttaggaaatgttgctcaactccagtgtgtctcatctcttcaggatt 381

                                                                       
Query: 182 cccacctccacagagtaagtcacctgagacccttaaacatggttgtccttttgaaacacc 241
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 382 cccacctccacagagtaagtcacctgagacccttaagcatggttgtccttttgaaacacc 441

                                                                       
Query: 242 caattccttgccccctggcttgcttcagtcctgtgagtagctttgagtcacgtctccttc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caattccttgccccctggcttgcttcagtcctgtgagtagctttgagtcacgtctccttc 501

            
Query: 302 t 302
           |
Sbjct: 502 t 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)