Query= MSMg01no132_o16.b1 MSMg01no132_o16.b1 CHROMAT_FILE:
MSMg01no132_o16.b1 PHD_FILE: MSMg01no132_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:35 2005
(687 letters)
>mm_chr3_129609048_129610135
Length = 1088
Score = 1187 bits (614), Expect = 0.0
Identities = 672/696 (96%), Gaps = 11/696 (1%)
Strand = Plus / Plus
Query: 2 ggaattcctcaaggagttacgggtctcggatagcccggaaatactcacaggctaattctg 61
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 194 ggaattcctcaaggaggtaagggtctcggatagcccggaaatactcacaagctaattctg 253
Query: 62 agttcattgtgtcaccaggttttcagatctaggatttgaagtgaaatgctttaacaacct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 254 agttcattgtgtcaccaggttttcagatctaggatttgaagtgaaatgctttaacgacct 313
Query: 122 cagagcagaagaactcctgctcaaaattcacgagggtaggtagccttgctctttaaggtc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cagagcagaagaactcctgctcaaaattcacgagggtaggtagccttgctctttaaggtc 373
Query: 182 tctggtgggatgggtatttgatgctatctgtctgtagatctgattacctgggtctgtgat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tctggtgggatgggtatttgatgctatctgtctgtagatctgattacctgggtctgtgat 433
Query: 242 ctgttgca--------cagtaggtattcttatgataatgcaatttagagtcagtcctccc 293
|||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgttgcagcatcaagcagtaggttttcttatgataatgcaatttagagtcagtcctccc 493
Query: 294 tgcatgctttgagccttcagcaataacggcttgttattgctctttgcactatcattttgt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgcatgctttgagccttcagcaataacggcttgttattgctctttgcactatcattttgt 553
Query: 354 gctttcctttaattaaattgaaaatagttataattgaaactggctgtttactaggtttcc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gctttcctttaattaaattgaaaatagttataattgaaactggctgtttactaggtttcc 613
Query: 414 tgcttttctcattagctttggaggacatggggtctcggctctcctggaagctcttgagag 473
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 614 tgcttttctcattagctttggaggacatggggtctcggctctcccggaagctcttgagag 673
Query: 474 tctggtatgacacagggtgcagccacagaggcagctgttgcgtggttgcttataggcttt 533
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 674 tctggtatgacacagggtgcagccacagaggcagctgttgcatggttgcttataggtttt 733
Query: 534 tggtctactgtagggaagtctgctcattcaaagaa-actttta-tgtattaccaaagtca 591
|||||||||||||||||||||||| |||||||||| | ||||| ||||||||||||||||
Sbjct: 734 tggtctactgtagggaagtctgcttattcaaagaata-ttttaatgtattaccaaagtca 792
Query: 592 catgggtctttaaaaaataattctgaaaataccagatactcactgtataaagcagatttc 651
||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct: 793 catggatctttaaaaaataattctgaaaataccaaatagtcactgtataaagcaggtttc 852
Query: 652 atagtgacattcatgttccaagtgcattgtgcattt 687
||||||||||||||||||||||||||||||||||||
Sbjct: 853 atagtgacattcatgttccaagtgcattgtgcattt 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_o16.g1 MSMg01no132_o16.g1 CHROMAT_FILE:
MSMg01no132_o16.g1 PHD_FILE: MSMg01no132_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:35 2005
(639 letters)
>mm_chr3_129732190_129733228
Length = 1039
Score = 1181 bits (611), Expect = 0.0
Identities = 632/639 (98%)
Strand = Plus / Minus
Query: 1 cagggcaggcttgctctgactgcctgatgccctggaccctaatactaaggaaagtgatta 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 839 cagggcaggcttgctctgactgcctgatgccctggaccccaatactaaggaaagtgatta 780
Query: 61 tggtaattggggttgaggatgcccagtcccagggaactgtgcgttggacctggccagcag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 779 tggtaattggggttgaggatgcccagtcccagggaactgtgcgttggacctgaccagcag 720
Query: 121 cgagctttaatggacataatctctcctctacagcaaaccttgttaggctgtcagatttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cgagctttaatggacataatctctcctctacagcaaaccttgttaggctgtcagatttga 660
Query: 181 ggaaaatactcagctgctttctcctgttggagcaaaactgagtcacagaattcaaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ggaaaatactcagctgctttctcctgttggagcaaaactgagtcacagaattcaaatgat 600
Query: 241 agctgttgtgagactgccttttaaatcttgagagatcaagcaagcctagacaacctaagg 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 599 agctgttgtgagactgccttttaaatcttgagagatcaagcaagcctggacaacctaagg 540
Query: 301 gcctgtagctctctgtacccaaggagttacttagcatatcctcagtggcaatgcttggca 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gcctgtagctctctgtacccgaggagttacttagcatatcctcagtggcaatgcttggca 480
Query: 361 gtgattggttaaacatggaaaactcttaagtccacccagaggattagctgctatttaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgattggttaaacatggaaaactcttaagtccacccagaggattagctgctatttaagg 420
Query: 421 ttgggcttacagagttgtgtgaggaccaagcacagcgtagtctggcttgtggaactgcta 480
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 419 ttgcgcttacagagttgtgtgaggaccaagcacagcgtagtctggctcgtggaactgcta 360
Query: 481 ttgctgtaggcaccagcagccaagtacactatcctttgtaaactcaccaactagttaaca 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggctgtaggcaccagcagccaagtacactatcctttgtaaactcaccaactagttaaca 300
Query: 541 tagctgccttaaaggccatagagaaaattgtcctccaagggggaaaaacccttatggaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tagctgccttaaaggccatagagaaaattgtcctccaagggggaaaaacccttatggaag 240
Query: 601 acagatcggacagggccagattgtacccagactttgtgg 639
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 acagatcggacagggccagattgtacccagactttgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
