BAC Information

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BAC

Clone NameMSMg01-133F08
Chromosome3 (Build37)
Map Location 61,413,214 - 61,413,540
singlet/doubletsinglet
Overlap genenone
Upstream geneMbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F08.T7 (MSMg01no133_f08.b1)MSMg01-133F08.TJ (MSMg01no133_f08.g1)
ACCAG340341AG340342
length702724
length of high quality
(start - end)
327 (373 - 699)173 (75 - 247)
definitionCHROMAT_FILE: MSMg01no133_f08.b1 PHD_FILE: MSMg01no133_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:07 2005CHROMAT_FILE: MSMg01no133_f08.g1 PHD_FILE: MSMg01no133_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCA
AGGATACCACTGGAAAGAGACAGCTTTTGGTGTGTTCATCTTTCAATGAG
CTGGTATTATAACCCCGGAGCTTGTTATGAAATTTTACAGTGGAGAGATT
CCATCACATCAAAATTGAAGCAGCTTATCATTTCCCTATCTTGCATAAAT
TAACATCATTATTTGCAAGTCTTAACTGGATATATGTTTTAAAAGTTTAA
CTAACTGACAATTATTTTGATGTTTCTCTTTGTAGTGAAATACAGAAAAT
GTGGATCATACTTAAAAGTATGATTTTAGTGCAAAGTCATATTCTAAGTG
TTTTTTAAGCCACCCCACCCCCTAGAGACTTGCACAAAGACAGTAAATGG
GAAAAAATGAGAATGACAGACTTTTCTCCTCCAATCTTGTTTCTGGCTCT
ACCTCCCTTCTCCTGCCTCTTCCTCCTTCAAACATGCTACAACTTGTGTA
ATCCCTACCTTCACTGGCTGATTCTTTCAAACCCATTTCTACAGTGAATA
TTCAATGCAATTTAAATTGTAAAAAGTAAATTGTGTTTTTAGTATAAATG
TTTAATATATTTGAAAAAGAAGGCAAGAAGGGAGGAGGAGGTGGAAGATG
AGGTGAGTAAGGGGGCTGAGACAGATGTCTGTGTGCAAGCATCACAGGGA
CA
CAATATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCTAAAAATCAGCAGATGGATGGATTCTAGGGTTTTTT
TTGGGGGGGGAGGGGATTCTGCTTTTCTACCCACTCTGTTAGCCTGTATC
TTTTTTATTGGAGAATTGAATCTACTGATGTTAAAAGATATTAATGACTA
GTGATTGGTAAATCCTGTTATACTGTTGTTGTTATTGCTATTGTTGCTGT
TTTTGTGTTGGTGTCTGCATATGCGTGCGCGTGTGTGTGTGTGTGTCTGT
GTCTGTATCTGCGTCTATATGTCTGTGAGCCTATTTTTCCCCTATCTGAC
TTCTGCTGGTGTAATATTTTCTATTGCCCAACCGTTTTTGCCTATAGTTT
ACTTCCTCACGATATTTTCTTTGCACTATTCTTCACAGGCCTGCAATCAT
CGACATCTCTTGCTTCAACTCTCACCTTATTTATTTGTACCTTGACCTTT
CTTTTATGACCACTATTTTCCCTTTTTACTCCTATTTCCCATCCCCTTTG
CCCTGTACTTTATTCCATATAATTCTCATACTATCTTCTTATCATACTTT
CCCCTGCGTCTTCTACTTTCCTCCTCTTCTCTCCTCTCTTGTTGATTTTC
TCCATTCCCTGTTCCCTCTTACTTCCTTCCTTCCATTCTCTTTCTCGCCT
CTCATCTTCCCAACTTCTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f08.b1 MSMg01no133_f08.b1 CHROMAT_FILE:
MSMg01no133_f08.b1 PHD_FILE: MSMg01no133_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:07 2005
         (327 letters)



>mm_chr3_61413014_61413740
          Length = 727

 Score =  571 bits (295), Expect = e-167
 Identities = 319/327 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagacttgcacaaagacagtaaatgggaaaaaatgagaatgacagacttttctcctcc 60
           ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct: 201 tagagacttgcacaaagacagtaaatgggaaaaaatgagaatgtctgtcttttctcctcc 260

                                                                       
Query: 61  aatcttgtttctggctctacctcccttctcctgcctcttcctccttcaaacatgctacaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aatcttgtttctggctctacctcccttctcctgcctcttcctccttcaaatatgctacaa 320

                                                                       
Query: 121 cttgtgtaatccctaccttcactggctgattctttcaaacccatttctacagtgaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgtgtaatccctaccttcactggctgattctttcaaacccatttctacagtgaatatt 380

                                                                       
Query: 181 caatgcaatttaaattgtaaaaagtaaattgtgtttttagtataaatgtttaatatattt 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 caatgcaatttaaattgtaaaaagtaaattgtgcttttagtataaatgtttaatatattt 440

                                                                       
Query: 241 gaaaaagaaggcaagaagggaggaggaggtggaagatgaggtgagtaagggggctgagac 300
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 441 gaaaaagaaggcaagaagggagaaggaggtggaagatgaggtgagtaaggggactaagac 500

                                      
Query: 301 agatgtctgtgtgcaagcatcacaggg 327
           |||||||||||||||||||||||||||
Sbjct: 501 agatgtctgtgtgcaagcatcacaggg 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)