Query= MSMg01no133_l09.b1 MSMg01no133_l09.b1 CHROMAT_FILE:
MSMg01no133_l09.b1 PHD_FILE: MSMg01no133_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:35 2005
(587 letters)
>mm_chr3_18599725_18600711
Length = 987
Score = 1096 bits (567), Expect = 0.0
Identities = 582/587 (99%)
Strand = Plus / Plus
Query: 1 taagtttggtgttggagtttcttgggatttaacatgcccaggaaaaatatctcagctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtttggtgttggagtttcttgggatttaacatgcccaggaaaaatatctcagctgaa 260
Query: 61 caattgtaaaataaagagaaagagggcaaggaaacttggtcttagacatgtagaagctct 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattgtaaaagaaagagaaagagggcaaggaaacttggtcttagacatgtagaagctct 320
Query: 121 atattttaaatgagaagaatgagcttgctaacctgtgcctgtgtgctataagcggcaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattttaaatgagaagaatgagcttgctaacctgtgcctgtgtgctataagcggcaatg 380
Query: 181 gctgttccttaaaaagtgttgactatacaattagagctgagcatattcaattgctttgac 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgttccttaaaaagtgttgactacacaattagagctgagcatattcaattgctttgac 440
Query: 241 tagataaaattttcatttaagttattgttttaaatagactaaaaacataattagaaaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagataaaattttcatttaagttattgttttaaatagactaaaaacataattagaaaacc 500
Query: 301 tctattcatggaaaaaccctacacacacattaatatgaacacaatagagctacctacctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctattcatggaaaaaccctacacacacattaatatgaacacaatagagctacctacctc 560
Query: 361 ttcttttattatatggagtacagcgctacagtcacctaggcattacaggttgctcagttt 420
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ttcttttattatattgagtacagcgctacagtcacctaggcactacaggttgctcagttt 620
Query: 421 tatgttacagtaaaatcctggaggaaactacatttcactcagtttgggaagttcaagtcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgttacagtaaaatcctggaggaaactacatttcactcagtttgggaagttcaagtcc 680
Query: 481 aaccttggacagctccatcgatctggctttaagtgagggtaaaacatcactgcagaaagc 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 aaccttggacagctccatcgatctggctttaagtgagggtaaaacatcacagcagaaagc 740
Query: 541 atgtaggagaaatagtcacattttgaactgaaatggagagatgagca 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgtaggagaaatagtcacattttgaactgaaatggagagatgagca 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_l09.g1 MSMg01no133_l09.g1 CHROMAT_FILE:
MSMg01no133_l09.g1 PHD_FILE: MSMg01no133_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:35 2005
(270 letters)
>mm_chr3_18742094_18742764
Length = 671
Score = 420 bits (217), Expect = e-122
Identities = 255/271 (94%), Gaps = 10/271 (3%)
Strand = Plus / Minus
Query: 1 ttgatcctcctgcctcagccttccctaggctgtgatttattcacc----tactctcctgt 56
||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 403 ttgatcctcctgcctcagccttccctaggctgtgattta---agcaatgtactctcctgt 347
Query: 57 ctggaattttgatttttgaagatattttaagttatgctgctttaatgattactttccatt 116
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ctggaattttgatttttgaagatattttaagttatgctgctttaatgattactttccatc 287
Query: 117 tcaatatttgatatgatttgttcagaagtcgtacccttattgttgctctgtgtacaatat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tcaatatttgatatgatttgttcagaagtcgtacccttattgttgctctgtgtacaatat 227
Query: 177 gccattttctttctatctttaggtttttttgttttgttttgtttttgcgctttgttcttt 236
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 226 gccattttctttctatctttaggtttttt-gttttgttttgtttttgttttttgttcttt 168
Query: 237 tggtttttttgctttgttttgtttttgtttt 267
||||||||| | ||||||||||||| |||||
Sbjct: 167 tggtttttt-gttttgttttgtttt-gtttt 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 671
Length adjustment: 9
Effective length of query: 261
Effective length of database: 662
Effective search space: 172782
Effective search space used: 172782
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
