Query= MSMg01no133_m13.b1 MSMg01no133_m13.b1 CHROMAT_FILE:
MSMg01no133_m13.b1 PHD_FILE: MSMg01no133_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:41 2005
(596 letters)
>mm_chr3_113732228_113733227
Length = 1000
Score = 1079 bits (558), Expect = 0.0
Identities = 584/595 (98%), Gaps = 4/595 (0%)
Strand = Plus / Plus
Query: 6 ggaattcaaatatgctgccaactgaccagggaatcaaatgtatagatttaagagatacac 65
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaaatatgcagaaaactgaccagggaatcaaatgtatagatttaagagatacac 265
Query: 66 tgaagaggagatgggtttcttagaaccacttccctcttgttagactttgctagtggagtg 125
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgaggaggagatgggtttcttagaaccacttccctcttgttagactttgctagtggagtg 325
Query: 126 accacgttttcagccctaaggctcagggctaggcc----cagtaaagaaactgactggat 181
|||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 326 accacgttttcagccccaaggctcagggccaggccaggccagtaaagaaactgactggat 385
Query: 182 tggttggagaattctgcaggcagctttcctgtccttctctattccctgcttctccctttc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tggttggagaattctgcaggcagctttcctgtccttctctattccctgcttctccctttc 445
Query: 242 atccagtatcaggatttgctggaaaagcaagtgactgattcccttagtttctactgctat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atccagtatcaggatttgctggaaaagcaagtgactgattcccttagtttctactgctat 505
Query: 302 gggttcttggtctttcctcttttcttgcagacaagcccctcagtgagctctgggcagtct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gggttcttggtctttcctcttttcttgcagacaagcccctcagtgagctctgggcagtct 565
Query: 362 ttgaacatttgagaagcttaactttcatctcaccaactagattttgcctacaagatgagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttgaacatttgagaagcttaactttcatctcaccaactagattttgcctacaagatgagg 625
Query: 422 attttgatctttagagttccttcatgccaccttcgttagtctctagtttaaaaatattag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attttgatctttagagttccttcatgccaccttcgttagtctctagtttaaaaatattag 685
Query: 482 taaaacacttttggatgcaggcagcacagagcccactggttcctgattccatggctgcct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 taaaacacttttggatgcaggcagcacagagcccactggttcctgattccatggctgcct 745
Query: 542 taggaagcaaggtttttggagatggataanattaccgctgccagtccaggactcc 596
||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 746 taggaagcaaggtttttggagatggataaaattaccgctgccagtccaggactcc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1000
Length adjustment: 10
Effective length of query: 586
Effective length of database: 990
Effective search space: 580140
Effective search space used: 580140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_m13.g1 MSMg01no133_m13.g1 CHROMAT_FILE:
MSMg01no133_m13.g1 PHD_FILE: MSMg01no133_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:41 2005
(564 letters)
>mm_chr3_113807973_113808935
Length = 963
Score = 986 bits (510), Expect = 0.0
Identities = 534/542 (98%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 23 ttttatcatctgtgggcaaagatactttaccttctttctttccaacttacaggaagagaa 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ttttatcatctgtgggcaaagatactttaccttctttctttccaacttacaggaagagaa 904
Query: 83 caatatgaataaaatatcactaaatttaaaaattgttttaaatgatgaaaatataataag 142
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 903 caatatgaataaaatatgactaaatttaagaattgttttaaatgatgaaaatataataag 844
Query: 143 aaagaaaacattcggtggaggcacaaaaagggaaactaatcaaaataatttgtataaaaa 202
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 843 aaagaaaacattcggtggaggcacaaaaaaggaaactaatcaaaataatttgtataaaaa 784
Query: 203 ttattttcaataaaatggaatgtaaaaattgcacaataattatcaaagatttcacaggca 262
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ttattttcaataaaatggagtgtaaaaattgcacaataattatcaaagatttcacaggca 724
Query: 263 atttagtaagaactcaagtatataattaattttcaagaatttaatgtaaaattgcatttt 322
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 723 atttagtaagaactcaagtatataattaactttcaagaatttaatgtaaaattgcatttt 664
Query: 323 gataattaaatagaattcaaataaattataatgatggtttaagtaacagttatgtgattt 382
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 663 gataattaaatagaattcaaataaactataatgatggtttaagtaacagttatgtgattt 604
Query: 383 tattacatttgtttaattttcctttaatttgatgatagcctccctaaaatcttatgatca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tattacatttgtttaattttcctttaatttgatgatagcctccctaaaatcttatgatca 544
Query: 443 gaattatgaaaaattaaactaaaactctttaaatgagtcagtatcagtcatgaacaattg 502
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 543 gaattatgaaaaattaaactaaaactctttaaatgagtcagtatcagtcataaacaattg 484
Query: 503 gtttactagcctgagaaatgaacagagtctggaagatgatgtgggaaaacatatcaatag 562
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gttt-ctagcctgagaaatgaacagagtctggaagatgatgtgggaaaacatatcaatag 425
Query: 563 ga 564
||
Sbjct: 424 ga 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
