Query= MSMg01no134_g08.b1 MSMg01no134_g08.b1 CHROMAT_FILE:
MSMg01no134_g08.b1 PHD_FILE: MSMg01no134_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:45 2005
(624 letters)
>mm_chr3_141499838_141500858
Length = 1021
Score = 1094 bits (566), Expect = 0.0
Identities = 609/624 (97%), Gaps = 3/624 (0%)
Strand = Plus / Minus
Query: 1 ttctttatactcccccaacagaaagcttcttaggggccatgctggactttgcttccagga 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 821 ttctttatactcccccaacagaaagcttcttaggggacatgctggacttggcttccagga 762
Query: 61 aattcgctggcacatttcgtttgttgtgtggtccaggctcacaagtccctaataatcacc 120
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 761 aatttgctggcacatttcgtttggtgtgtggtccaggctcacaagtccctaataatcacc 702
Query: 121 agttttcatgttcctcaggccaaccatattcatcacacttcttggtttatggatggaaag 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 701 agttttcatgttcctcaggccaaccagattcatcacacttcttggtttatggatggaaag 642
Query: 181 gcaatgagaatacattttttttttaaacttgaacatgttttggtggctacaccatctcag 240
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 641 gcaatgagaataca--ttttttttaaacttgaacatgttttggtggttacaccatctcag 584
Query: 241 aaactcccagtcccataaagagtggaaaggaaaggggctgtttttaaaatgatacaattt 300
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 583 aaactcccagtcccataaagagtggaaaggaaaggggctgtgtcaaaaatgatacaattt 524
Query: 301 aacagaactgactgttagagaaactaatgccatagattttaagagaaaaattggtaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aacagaactgactgttagagaaactaatgccatagattttaagagaaaaattggtaatat 464
Query: 361 ttagggagagcagttcttttctgtctgtttcaaaacaagactcatttgtgttctatcggg 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 463 ttagggagagcagttcttttctgtttgtttcaaaacaagactcatttgtgttctatcggg 404
Query: 421 gaaccagtgccttatggaatttgtatatactgtaattattcagggttagggaacaaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaaccagtgccttatggaatttgtatatactgtaattattcagggttagggaacaaacag 344
Query: 481 ttgtatttgttacaaattgtgtatgacttgttttcttattcccctcaataaaatggtgtc 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 343 ttgtatttgttacaaattgtgtatgacttgttttcttatttccctcaataaaatggtgtc 284
Query: 541 attctccccattcaaaaacttatgactggtgtttcatagttgggccttttctttgtcttt 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 attctccccattcaaaaac-tatgactggtgtttcatagttgggccttttctttgtcttt 225
Query: 601 gaaatgaccacatgacagcagctg 624
||||||||| ||||||||||||||
Sbjct: 224 gaaatgacctcatgacagcagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1021
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1011
Effective search space: 620754
Effective search space used: 620754
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_g08.g1 MSMg01no134_g08.g1 CHROMAT_FILE:
MSMg01no134_g08.g1 PHD_FILE: MSMg01no134_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:45 2005
(776 letters)
>mm_chr3_141344520_141345697
Length = 1178
Score = 1352 bits (699), Expect = 0.0
Identities = 751/781 (96%), Gaps = 25/781 (3%)
Strand = Plus / Plus
Query: 1 gggtcttttgtttgtttatttgtttttata---ccctagattcacctgcaacttgggtcc 57
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 201 gggtcttttgtttgtttatttgtttttataaaac--tagattcacctgcaacttgggtcc 258
Query: 58 tcagctctatactttaacattctgattttattattttgaggggaccatggtggttttttt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcagctctatactttaacattctgattttattattttgaggggaccatggtggttttttt 318
Query: 118 aaaagcaagaaatattagaatatattaagtcttgaaatacattgcaaaactgaaatattt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaagcaagaaatattagaatatattaagtcttgaaatacattgcaaaactgaaatattt 378
Query: 178 ttagtgtcttaaaaaaaatcacatttttccttaaatgacagaacagacaaaagtcattgc 237
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttagtgtcttaaaaaaa-tcacatttttccttaaatgacagaacagacaaaagtcattgc 437
Query: 238 aaacacattcattttcgagttatatcttcctcagaacaacacatgcaaatcatatttagt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaacacattcattttcgagttatatcttcctcagaacaacacatgcaaatcatatttagt 497
Query: 298 agcaatcacatttcctagcaactaagcatagctaattgcatttaacaaagtccctaccaa 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 498 agcaatcacatttcctagcaactaagcatagctaattgcatttaacaaagtctctaccaa 557
Query: 358 gataatttcacatttgaaaaattaataaacactttgaagaagacaga--tcttaaaaatt 415
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 558 gataatttcacatttgaaaaattaataaacactttgaagaagagagagatcttaaaaatt 617
Query: 416 cttttacttatttctaacccagtggcttacatctgctgttccatcactcagaaggctgag 475
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttttacttactcctaacccagtggcttacatctgctgttccatcactcagaaggctgag 677
Query: 476 gcaagaggattgttatcagttcaaaagcaagcctacctagtgagttcaaggtcaccctaa 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcaagaggattgttatcagttcaaaagcaagcctacctagtgagttcaaggtcaccctaa 737
Query: 536 gctataacttgagaccctttcccaaccaaattaaataaaaaaacaaaaacaacaacaaca 595
|||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 738 gctataacttgagaccctttcccaaccaaattaaatgaaaaaa----------------a 781
Query: 596 aaaaaaaaccagtgtccctctcaaattctgaaagcattctatggtccctcatcttctgag 655
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaaaaaaac-agtgtccctctcaaattctgaaagcattctatggtccctcatcttctgag 840
Query: 656 gtttgaaacaaaggattactgatacttgtttaacgaaactatatcattggtcaaaatgaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtttgaaacaaaggattactgatacttgtttaacgaaactatatcattggtcaaaatgaa 900
Query: 716 gtctactaattaaagccctcactacacttaactgtttgccatttcaccatttaaactaac 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gtctactaattaaagccctcactacacttaactgtttgccatttcaccatttaaactaac 960
Query: 776 t 776
|
Sbjct: 961 t 961
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 1178
Length adjustment: 10
Effective length of query: 766
Effective length of database: 1168
Effective search space: 894688
Effective search space used: 894688
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
