BAC Information

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BAC

Clone NameMSMg01-135C11
Chromosome3 (Build37)
Map Location 28,634,179 - 28,634,504
singlet/doubletsinglet
Overlap genenone
Upstream geneE030011K20Rik, Pld1, Tnik, Slc2a2
Downstream geneEG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135C11.T7 (MSMg01no135_c11.b1)MSMg01-135C11.TJ (MSMg01no135_c11.g1)
ACCAG341685AG341686
length724745
length of high quality
(start - end)
189 (69 - 257)327 (72 - 398)
definitionCHROMAT_FILE: MSMg01no135_c11.b1 PHD_FILE: MSMg01no135_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:12 2005CHROMAT_FILE: MSMg01no135_c11.g1 PHD_FILE: MSMg01no135_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAAGAGGATCCGCGGA
ATTCTATCTTACCCTTCAAGAAGACCTGATACCAATTTTCATCAAACTAT
TTCATAAAATCAAAGAGAACATACACTACCTAACTCATTTTATGAAGCCA
CAATTACTCTGATACCTAAACCACACAAGGACCCAACCAAAAAAGAGAAC
TTCAGACCTATCTTGCTTATGAATATCGATGCAAAAATACTCTATAAAAT
TCTTGCAAACTGATTCCAAGAACACATTATACAATCATTCACCATGATCA
AATAAGCTTCATCCCATGGATGCAAGGTTGCTTAATATTTTTAAAAATCC
ATTAACATAATACTCTATTTAAACAAAATCAAAGGAAAAAATTCACATGA
TCATCTCCTTACACGCCCAATAAGCATTTGACAAAATACAACCCCCCTTC
ATGTTACAAGTATTGCAGAGATCAGCAATTCCAGGCCCATATCTAAACAT
ATTACTAGCAATTTACCGCATATCTAAAGCCAATATCAAATTAAATGTAG
ACATACTTGAAGCATACCCAGTGAAACTGTTGACAAGACCAAGGATGACC
ACTGTACCCTTATATATTCAATATAGCATTTAAAGTGTTAGCTATTACCA
TAAGTACATCATAAGAGATTATGGGGTTATAAATTGCCATAATAAGTTAT
AACAACCTTTCTATTTTGTTTATG
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGCACCCTTATCGTCTACTGTGCCAAA
GCAGCTAACTGAATTTGGAGTTTTGAGTGTGAACTGGCAAGAGAGGTGAG
TGGTCAGGTCATAGCAAATGGTACAGAACTTCATCTATAGACTATGAAGA
AAATTGGCTTATTTGAGTATTGGGTCAATAGAATCTTATTTGTGCATAAA
AAATATAAAATCTGTAGGAGAATAGATAAATACAACAAGGTAATCAAGGC
TCAGAGAGATAGATTATCCTCTCTTCTCTTTCCTCTGTAGATCACAGCTT
TAGCCATTTACTATGTGTGTCTAGGTGGGGGTACTGAGGGGAAAGGCCAG
TAAACTGCACCCCCACCCGAGAGATGGGAAAGGAGTTTCTAATGCAACAG
CACCAGGAGGAAGGTGACTACTTGGCATATAAACTCTAAAGGCCGTGCTG
CAGGGAGTGGCGCAGCAGGTTACGTCACTCAGCTTGTCTTTCCGGTTCTG
GATTCCCCTCTAAATCTTGCTCGACCGCTCGCCGTATCTTTCCAATCCTT
CCTTACACCTAGTCTACCTTCTTTTTTTTGTATCTTCTTATATTTTGTCT
TATTTTATTTTTTTTGTTGCACTCTTCCACAACCTTTTTTTATTTTTTTT
ATGATTTACGCTCTTTTTTTTCATTATAGTTCTGAACTACTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_c11.g1 MSMg01no135_c11.g1 CHROMAT_FILE:
MSMg01no135_c11.g1 PHD_FILE: MSMg01no135_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:12 2005
         (327 letters)



>mm_chr3_28633979_28634704
          Length = 726

 Score =  555 bits (287), Expect = e-162
 Identities = 317/327 (96%), Gaps = 1/327 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgcacccttatcgtctactgtgccaaagcagctaactgaatttggagttttgagtgtg 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 attgcacccttattgtctactgtgccaaagcagctaactgaatttggagtgttgagtgtg 260

                                                                       
Query: 61  aactggcaagagaggtgagtggtcaggtcatagcaaatggtacagaacttcatctataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactggcaagagaggtgagtggtcaggtcatagcaaatggtacagaacttcatctataga 320

                                                                       
Query: 121 ctatgaagaaaattggcttatttgagtattgggtcaatagaatcttatttgtgcataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatgaagaaaattggcttatttgagtattgggtcaatagaatcttatttgtgcataaaa 380

                                                                       
Query: 181 aatataaaatctgtaggagaatagataaatacaacaaggtaatcaaggctcagagagata 240
           |||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 381 aatatataatctgtaggagaatagataagtacaacaaggtaatcagggctcagagagata 440

                                                                       
Query: 241 gattatcctctcttctctttcctctgtagatcacagctttagccatttactatgtgtgtc 300
           ||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gag-accctctcttctctttcctctgtagatcacagctttagccatttactaggtgtgtc 499

                                      
Query: 301 taggtgggggtactgaggggaaaggcc 327
           |||||||||| ||||||||||||||||
Sbjct: 500 taggtgggggcactgaggggaaaggcc 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 726
Length adjustment: 9
Effective length of query: 318
Effective length of database: 717
Effective search space:   228006
Effective search space used:   228006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)