BAC Information

Click to search

BAC

Clone NameMSMg01-135H12
Chromosome3 (Build37)
Map Location 34,476,662 - 34,477,020
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
Downstream geneEG622074, Sox2, LOC100041108, LOC665655, Ube2l3-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135H12.T7 (MSMg01no135_h12.b1)MSMg01-135H12.TJ (MSMg01no135_h12.g1)
ACCAG341919AG341920
length719715
length of high quality
(start - end)
362 (321 - 682)500 (66 - 565)
definitionCHROMAT_FILE: MSMg01no135_h12.b1 PHD_FILE: MSMg01no135_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:36 2005CHROMAT_FILE: MSMg01no135_h12.g1 PHD_FILE: MSMg01no135_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTCCTANATCGNGAGGTGGGCGGAATTCCTGCCC
ATTACTGAAACATGTAAAACCTTTTGAGACTGTGGCTGTTCATTCAAACG
TTTTAACATTTATGAAACACAGTCATATTAAGAAAAAAAAATACGCGTTG
AAATAATGTAGTAATCAAGACTTAGCCACTTACAGGAGGCCAGTGGGAGC
TGAGTTTATGTTATTGATTTTAGAACTACAGCGAAAGAGAGAGATAGAGA
GACAGAGAGAGAGAGAGAGGTGAAATATTGCCTTCACTGTTTTCAGATAA
TAATGACTGTTNGTGCATTATTATAAAATTTAATTAGCTATATAAATGCC
AGAAGAACAAACGGCTTGCCATTGTCTTGATATCTTTCCAGAAATTAGTC
TTTTAAAACACAAATTTGCCATATTAATCATCTAAAAATATTTTTGATCA
CTGAATTAATGGTTTTAGGCCTGTTTTCAGGTGCTCATTGCTATAGGTGA
TTGCTTCTTAATTACTACATGGACTCTCTATTCACTCATATTAATTCATG
TTTGCTGGCACAGTCCCAGAGGCAGCCTGCCCTGGATCTTCTAATTACTT
CTATAATTGAATTTGCCCACTTTTTCTAACCTATTTTTTAAACTGACTGT
GTTTGTCCCAAGCTTATTGCGTCTTTTTTTGTGTCAGTTCCCCGCTAGCA
GAGTGTACATCGATTCTTG
GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGAAATTGGGGGTGTCATTTAAACACTCAATGAA
AGAATTTATGCAGAGTGGCTTGTGCAGTGGGTGGAGTCAGTCTGACTGCA
GTGGAGGTAGAAAAACTGAGCTCTGTGTACCTGCCCATCCCTCCTTAGGA
CAAAGGCTGTGTAATCTGAGACCATGAAGGGGAATCAGTCCTTGGTAGAC
CAGTTTATCAGAGCCATTAGGACACTTAGTTATCTCCTTCTGAAGTTCCC
ATACGTTTCCAGGAATAAAGGACCATGTGCTCCTGAGGGAGGGGCAGGTG
CTCTTGAGGAAACTAAAAATTAAGAGGAGCTGTGTTCACACCCCAGTTCA
CTGGGCCGCACAGAAGTATGGTCACAGAGGAGTGGTTTTGTTTGTTTGTT
TTAAAAAAAGACTGATTCAACAGAAAACTTTGTGACTTTTCTGAGTTCCA
TGATGGGGTGGGACCTTTATGAAGTAGGAGGAGCTCTAACAGATTAAAAT
GATCTGGACTATGACACAGATGACTTTGTGAGGTGCTAAAAGGACTTGGA
GAGGAGATGAGGAGGAGAGTAACAGCCTCAATCTTCATCCCCATATGTAT
ACAGCTTGTTTTGACTTTGAGTCCCCAGATATCTTGACAGAACTCCCCTC
TTGTGTTTGCGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_h12.b1 MSMg01no135_h12.b1 CHROMAT_FILE:
MSMg01no135_h12.b1 PHD_FILE: MSMg01no135_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:36 2005
         (362 letters)



>mm_chr3_34476462_34477223
          Length = 762

 Score =  650 bits (336), Expect = 0.0
 Identities = 354/360 (98%), Gaps = 2/360 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttataaaatttaattagctatataaatgccagaagaacaaacggct-tgccattgtcttg 59
           ||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct: 201 ttataaaatttaattagctatataaattccagaagaacaaacgg-tatgccattgtcttg 259

                                                                       
Query: 60  atatctttccagaaattagtcttttaaaacacaaatttgccatattaatcatctaaaaat 119
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 260 atatctttccagaaattagtcttttaaaaaataaatttgccatattaatcatctaaaaat 319

                                                                       
Query: 120 atttttgatcactgaattaatggttttaggcctgttttcaggtgctcattgctataggtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atttttgatcactgaattaatggttttaggcctgttttcaggtgctcattgctataggtg 379

                                                                       
Query: 180 attgcttcttaattactacatggactctctattcactcatattaattcatgtttgctggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attgcttcttaattactacatggactctctattcactcatattaattcatgtttgctggc 439

                                                                       
Query: 240 acagtcccagaggcagcctgccctggatcttctaattacttctataattgaatttgccca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acagtcccagaggcagcctgccctggatcttctaattacttctataattgaatttgccca 499

                                                                       
Query: 300 ctttttctaacctattttttaaactgactgtgtttgtcccaagcttattgcgtctttttt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 ctttttctaacctattttttaaactgactgtgtttgtcccaagcttattgtgtctttttt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)