Query= MSMg01no135_j18.b1 MSMg01no135_j18.b1 CHROMAT_FILE:
MSMg01no135_j18.b1 PHD_FILE: MSMg01no135_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:46 2005
(685 letters)
>mm_chr3_156572585_156573669
Length = 1085
Score = 1208 bits (625), Expect = 0.0
Identities = 666/680 (97%)
Strand = Plus / Plus
Query: 6 aattcattgttatctcccatattcttagctcatatacagccccaccatcgccttccttcc 65
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 206 aattcattgttatctctcatattcttagctcatatacagccccaccatcgtcttccttcc 265
Query: 66 caaacagtccctctctgctcttatttcatttaattttaatatattaatgtttgtctaggc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caaacagtccctctctgctcttatttcatttaattttaatatattaatgtttgtctaggc 325
Query: 126 atgactagattttacctgtgcaaaataacatctatctttcttttattctatttttctctc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgactagattttacctgtgcaaaataacatctatctttcttttattctatttttctctc 385
Query: 186 ctgttctccctgccacccctcttttggcttttcatattccttctcctttgtgtcctagtt 245
|||||||||||||||| |||||||||||||| ||| |||||||||| ||||||||||||
Sbjct: 386 ctgttctccctgccacgtctcttttggctttttatactccttctcctctgtgtcctagtt 445
Query: 246 actaagtatataaacgcatattctgcctaggagagaaaacacaatgagtgtctctctatg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 actaagtatataaacgcatattctgcctaggagagaaaacacaatgagtgtctctctatg 505
Query: 306 tcttattacacttaatatgataatattcgggtttatccactctcctttaagtgtcatgac 365
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 506 tcttattacacttaatatgataatattcgggcttatccactctcctttaagtgtcatgac 565
Query: 366 ttcatttttttcttatcaaaatccattagactgtctctaagtggcttaaaatattgttta 425
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 566 ttcatttttttcttatcaaaatccattaaactgtctctaagtggcttaaaatattgttta 625
Query: 426 taaaaagttgactgacattcaggtagatgtttagaatgatactttttgttattctttgaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taaaaagttgactgacattcaggtagatgtttagaatgatactttttgttattctttgaa 685
Query: 486 attttgaagtatactattccttatattcttttttgaaatgtattctaatatcttgatcat 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attttgaagtatactattccttatattcttttttgaaatgtattctaatatcttgatcat 745
Query: 546 acctatttcctacatccagttctacctgagcttcctaacacatgtacctccaaattttat 605
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 746 acctatttcctacatccagttctaactgagcttcctaacacatgtacctccaaattttag 805
Query: 606 tattatttttaaataattctgtgaaatagtctttaattttagctggntttccctataatg 665
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 806 tattatttttaaataattctgtgaaatagtctttaattttagctggttttccctgtaatg 865
Query: 666 ctttccttggcttccttttc 685
| ||||||||||||||||||
Sbjct: 866 ccttccttggcttccttttc 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_j18.g1 MSMg01no135_j18.g1 CHROMAT_FILE:
MSMg01no135_j18.g1 PHD_FILE: MSMg01no135_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:46 2005
(617 letters)
>mm_chr3_156700225_156701245
Length = 1021
Score = 1129 bits (584), Expect = 0.0
Identities = 607/616 (98%), Gaps = 4/616 (0%)
Strand = Plus / Minus
Query: 3 tataaaatgagtatcttttctgttaaaagttggaaaatgtttggcatagcttaaatgtct 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tataaaatgagtatcttttctgttaaaagttggaaaatgtttggcatagcttaaatgtct 759
Query: 63 cgctgcttaattctaaaatccacttttactactggtttatgcaatttaaagattagttat 122
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 758 ctctgcttaattctaaaatccacttttactgctggtttatgcaatttaaagattagttat 699
Query: 123 caagaaagtgatgatg--gtacatttacaactatagatcgaatgctgtcaaagtatgaca 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 caagaaagtgatgatggtgtacatttacaactatagatcgaatgctgtcaaagtatgaca 639
Query: 181 gggtacatgcgaatgttacttattac--ttttttttctattctcaaactctagcatgaag 238
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 638 gggtacatgcgaatgttacttattacttttttttttctattctcaaactctagcatgaag 579
Query: 239 tttaagaacacaacttcatattgttaaggcttaggatccatctgtaagtctttgacctta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttaagaacacaacttcatattgttaaggcttaggatccatctgtaagtctttgacctta 519
Query: 299 aatttctctctctaaaaagaaagatgttccaggtggctaaagaagatgtcagtatattgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 aatttctctctctaaaaagaaagatgttccaggtggctaaagaagatgtcagtatattgt 459
Query: 359 tcctgaaaatgagctgtacatattttattattggcagtgacaagatactctgtgtaaaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tcctgaaaatgagctgtacatattttattattggcagtgacaagatactctgtgtaaaaa 399
Query: 419 aagaaagcataaaaataaacaccacatacccaaattcattaggtacaaattttagtaggt 478
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagaaagtataaaaataaacaccacatacccaaattcattaggtacaaattttagtaggt 339
Query: 479 gcttcacagtctcatattttatcaaaatccttaaaatcaggacctagacttttcatgaag 538
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 338 gcttcacagtctcatattttatcaaaatccttaaaattaggacctagacttttcgtgaag 279
Query: 539 agcaagaaaataaatatattacattttgaatttgcaggctgtatagtctccaccatatct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 agcaagaaaataaatatattacattttgaatttgcaggctgtatagtctccaccatatct 219
Query: 599 acttgattcagtacag 614
||||||||||||||||
Sbjct: 218 acttgattcagtacag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1021
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1011
Effective search space: 613677
Effective search space used: 613677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
