BAC Information

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BAC

Clone NameMSMg01-135K06
Chromosome3 (Build37)
Map Location 156,878,624 - 156,879,011
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneLOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135K06.T7 (MSMg01no135_k06.b1)MSMg01-135K06.TJ (MSMg01no135_k06.g1)
ACCAG342049AG342050
length1,171724
length of high quality
(start - end)
---388 (76 - 463)
definitionCHROMAT_FILE: MSMg01no135_k06.b1 PHD_FILE: MSMg01no135_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:49 2005CHROMAT_FILE: MSMg01no135_k06.g1 PHD_FILE: MSMg01no135_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGTTAACGCGGCGACTATTATCCCTCTATGCATAACATTCTTGGTTTGT
GTGGCGGTAGCCAGCGCGCAAGAACCCACNCCCTGGTGCCGCGCGCGCCG
ATGCGCGAGGATGGCATCATCCTGNTATTGTTTATAATGGTGTTGATGGA
GGGAGATGNGTTTTAATGATGAGTATGGCGGCAGCTACGCCTTAAGGTGG
TGAGTGGTGTGACGCGCGNGCNACGCTACTTAACGTGCCGTGATTGGTGT
ATTCATGAGTGCGTCACATCGATAACTATAATAGGGAATCGATATAGATA
CACATGAGCAGGCGCGGATGATTGGTAACAATGGGCGGGCTGACTGAGCG
CTCACCCGCAGTTCTGCCGTGTTTAGTATGACAATGCGAGAGGGNATGTA
GACCGGGCNACGCCACTCCCTCTCTTCGGGTGGCGTGGGGCGCGGGAGAG
GGGTGAGGGGAGTGTGTGGGCGGGCGGCGNTCCTCNNNNNNNCCNNNNCN
TNNNNNNNNNNNNNNNNNNNNACTCAAGCAAATGAGGACNNNNACTGGGG
AGGTGGGGTGATTATCGCCCTCGGTGCTCNCCCCCCTCCCTGAGTAGTGA
GGGAGGTCGGGTAGTGGTGGGGCTTCTCTCGCNNNGAGNTGGCCGTGGAG
TGGGATGTACCCGGCCCTCCGCGTCCTTAAATAAATTTTGGCGGGGACCG
TCCTTAAATAACGGAACCTCAACTTTATTAGGTGGTAGCGAGCAAAACAC
ACAGGGGGTTAATTTNNAACCCCAGGGTTTCCTCTTTTGCCCCACCGGAA
AAAAAGGGGAGGTAAGTTTATAGGGGGAGGGATGGAAATTTAGGGCGGGA
CTTCACGGACAAGCAAGGGGGCGGTCAAAGGCAAAAAGGGGGGTATAATA
CCGGGGCACGGCCCCTTTTATAGCGGGGGGGGCATGTGGGGCAATAATCA
AGTTGTCTTCGATAGAGGGATCCCAAGGGGGGGTGGATGAAAATACAGTG
CTCTTGGGGGGGGGGACCGTGCAACAACCACTTTCCCGCCGTCCACCTCG
CGGGGGCGGTCTCTCCACCAAACACCTCTCCCATCAATTACTCTATTAAG
CGCGGGTTGTGATTTTTTTCCCTATACGACCCGCTGCGGCGCTTTCTGGG
TTATTACACCCCCCGCGCCGN
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGACTGTGGTCTAGGTGCTAACCTA
CCCCACTTGGTAGTGACTGACCTGTCAGATACTTGGTGTTCTACTGCATC
TGTGGGAAGACAACCCCAGGGTTTTCTCCCCACTGTACCTCACCGTGTGC
TGTTACAGAGCAAACTGAATTTCAGTGGAATTAAAAACTTCTTGATATCA
TGCCAGCCATATCTATTCAGACTTCCCCTTACTCACATCCTTCCAAATTT
TCCATTCTGGGCTGTCACTAATTATAAGACATTAATGATTGTAATCTTCT
GTACACAATACACATGTAATCCATCACATTAACTATTTATAAAATGTCTA
TCATGTACCAGAGACTGTGCTCAGATCTTTAGAGAGATTATCTTGTTTTT
ACAATTACCTTATAAGGTAAGATGTTATTTTTCCTGTTTTGCAGCTGGGT
AAACTTAAAGTTCAGAGGAGTTTAATCTACCCAGTGTCACCTACTGTGGT
CATAAAGTAAGCAGACAGTATGTGGTTTTCCTTCCATATGAAGGGGGAAA
AAACAGGAACCCAAAGCCATTGTGACTTATCCCAGTTTGGCTTAGCCAAT
TTTGCTGGGTTAAAACTCAGACCTCTGATCCCACACCCCTGTATCCTAAC
CCTGACATCCGAACCCTTAAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_k06.g1 MSMg01no135_k06.g1 CHROMAT_FILE:
MSMg01no135_k06.g1 PHD_FILE: MSMg01no135_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:49 2005
         (388 letters)



>mm_chr3_156878506_156879293
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactgtggtctaggtgctaacctaccccacttggtagtgactgacctgtcagatacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgactgtggtctaggtgctaacctaccccacttggtagtgactgacctgtcagatacttg 447

                                                                       
Query: 61  gtgttctactgcatctgtgggaagacaaccccagggttttctccccactgtacctcaccg 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtgttctactgcatgtgtgggaagacaaccccagggttttctccccactgtacctcaccg 387

                                                                       
Query: 121 tgtgctgttacagagcaaactgaatttcagtggaattaaaaacttcttgatatcatgcca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgggctgttacagagcaaactgaatttcagtggaattaaaaacttcttgatatcatgcca 327

                                                                       
Query: 181 gccatatctattcagacttccccttactcacatccttccaaattttccattctgggctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gccatatctattcagacttccccttactcacatccttccaaattttccattctgggctgt 267

                                                                       
Query: 241 cactaattataagacattaatgattgtaatcttctgtacacaatacacatgtaatccatc 300
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cactaagtagaagacattaatgattgtaatcttctgtacacaatacacatgtaatccatc 207

                                                                       
Query: 301 acattaactatttataaaatgtctatcatgtaccagagactgtgctcagatctttagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 acattaactatttataaaatgtctatcatgtaccagagactgtgctcagatctttagaga 147

                                       
Query: 361 gattatcttgtttttacaattaccttat 388
           ||||||||||||||||||||||||||||
Sbjct: 146 gattatcttgtttttacaattaccttat 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)